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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:34.4TPM
GTEx:24.7RPKM
FANTOM5:22.7Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:High
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA039505

  

Endothelial cells

 Medium  

Glandular cells

 High  

Peripheral nerve/ganglion

 Low  
 
 
 

COLON - HPA RNA-seq

Average TPM

34.4
overview Male, age 54 Sample 1
TPM: 38.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 34.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 27.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 51.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 22
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 34
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 40.3
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 30.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 23.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 40.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 41.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 38.4
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 24.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

24.7

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 18.9
Samples: 149

Max RPKM: 121.5
Min RPKM: 4.6
Std RPKM: 12.1
Median RPKM: 16.2
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 121.5
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 56.3
GTEX-131XE-1026-SM-5EGKE 50-59 years, male 54.8
GTEX-ZF28-2526-SM-57WFH 60-69 years, male 52.5
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 47.7
GTEX-ZAB5-1426-SM-5HL9D 50-59 years, male 36.9
GTEX-XV7Q-2226-SM-4BRVY 40-49 years, female 36.4
GTEX-1399R-2126-SM-5K7WZ 30-39 years, male 36.1
GTEX-ZTTD-2626-SM-57WEX 50-59 years, male 32.5
GTEX-WQUQ-2626-SM-4MVNP 60-69 years, male 31.1
Show all
Colon - Transverse
RPKM: 29.1
Samples: 196

Max RPKM: 97.7
Min RPKM: 2.5
Std RPKM: 14.6
Median RPKM: 28.6
GTEX-132AR-2726-SM-5PNVN 50-59 years, female 97.7
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 79.4
GTEX-13S86-1626-SM-5Q5C5 40-49 years, male 79.4
GTEX-Q734-1126-SM-48TZY 40-49 years, female 77.5
GTEX-131XE-0826-SM-5HL9W 50-59 years, male 61.5
GTEX-UJHI-1126-SM-4IHLN 50-59 years, female 61.4
GTEX-139YR-2126-SM-5KM11 50-59 years, male 61.0
GTEX-XV7Q-2126-SM-4BRVX 40-49 years, female 56.2
GTEX-131XG-1826-SM-5LZV4 50-59 years, female 54.1
GTEX-ZYWO-1626-SM-5E44H 40-49 years, female 53.0
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

22.7

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 22.7
FF:10014-101C5 62,83,84 years, mixed 22.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.