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MTR

COLON - Expression summary

RNA expression
HPA:5.7TPM
GTEx:7.3RPKM
FANTOM5:39.5Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

5.7
overview Male, age 54 Sample 1
TPM: 5.5
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 5.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 4.4
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 5.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 4.7
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 6.2
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 6.8
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 5.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 6.7
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 4.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 5.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 6.9
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 6.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

7.3

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 9.1
Samples: 149

Max RPKM: 40.0
Min RPKM: 4.5
Std RPKM: 3.2
Median RPKM: 8.7
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 40.0
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 16.8
GTEX-11TUW-2326-SM-5EQMO 60-69 years, male 15.0
GTEX-13PVQ-2726-SM-5L3H7 50-59 years, male 13.7
GTEX-Y9LG-1326-SM-4VBQB 30-39 years, male 13.7
GTEX-13U4I-2626-SM-5SI9C 40-49 years, female 13.5
GTEX-14A5H-1626-SM-5SIAN 60-69 years, male 13.0
GTEX-13OVI-2126-SM-5KM3U 60-69 years, female 12.6
GTEX-1211K-1826-SM-5EGJ2 60-69 years, female 12.5
GTEX-ZYY3-2226-SM-5E45A 60-69 years, female 12.5
Show all
Colon - Transverse
RPKM: 6.0
Samples: 196

Max RPKM: 19.7
Min RPKM: 1.2
Std RPKM: 2.7
Median RPKM: 5.2
GTEX-11TUW-2026-SM-5EQL8 60-69 years, male 19.7
GTEX-148VJ-2626-SM-5QGPI 70-79 years, male 16.4
GTEX-13OVI-2026-SM-5J1MU 60-69 years, female 12.5
GTEX-13O61-1626-SM-5KM3T 60-69 years, male 12.2
GTEX-ZYFC-2626-SM-5NQ6S 50-59 years, male 12.2
GTEX-13U4I-2426-SM-5LU34 40-49 years, female 12.0
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 11.6
GTEX-YEC4-1926-SM-5IFHJ 40-49 years, male 11.3
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 11.2
GTEX-11ONC-2026-SM-5HL61 60-69 years, male 10.9
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

39.5

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 39.5
FF:10014-101C5 62,83,84 years, mixed 39.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.