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ABCD3

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:45.7TPM
GTEx:8.9RPKM
FANTOM5:33.0Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:High
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA032026

  

Antibody HPA032027

  

Antibody CAB032516

  

Antibody CAB075749

  

Endothelial cells

 Low   Medium   Medium   Not detected  

Glandular cells

 High   High   High   High  

Peripheral nerve/ganglion

 Medium   Medium   Medium   Not detected  
       
       
       

COLON - HPA RNA-seq

Average TPM

45.7
overview Male, age 54 Sample 1
TPM: 42.1
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 39.2
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 51.4
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 75.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 26.3
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 32.2
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 51.8
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 51.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 33.5
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 57.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 48.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 49.4
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 35.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

8.9

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 6.3
Samples: 149

Max RPKM: 9.7
Min RPKM: 3.2
Std RPKM: 1.3
Median RPKM: 6.2
GTEX-145ME-1126-SM-5SIAT 40-49 years, female 9.7
GTEX-ZVT4-2626-SM-5N9GJ 50-59 years, female 9.7
GTEX-13OW5-2826-SM-5KM1G 60-69 years, male 9.5
GTEX-WQUQ-2626-SM-4MVNP 60-69 years, male 9.5
GTEX-145MO-2626-SM-5QGPD 60-69 years, male 9.1
GTEX-ZTTD-2626-SM-57WEX 50-59 years, male 9.0
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 8.9
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 8.9
GTEX-WYVS-1126-SM-4SOJX 40-49 years, female 8.8
GTEX-13O61-1526-SM-5KM3P 60-69 years, male 8.6
Show all
Colon - Transverse
RPKM: 10.9
Samples: 196

Max RPKM: 25.5
Min RPKM: 3.0
Std RPKM: 4.2
Median RPKM: 10.5
GTEX-11P82-1026-SM-5BC5J 20-29 years, male 25.5
GTEX-ZYWO-1626-SM-5E44H 40-49 years, female 24.0
GTEX-131XG-1826-SM-5LZV4 50-59 years, female 20.8
GTEX-ZT9W-1826-SM-51MQX 50-59 years, male 20.4
GTEX-U4B1-1126-SM-4DXV3 40-49 years, male 20.2
GTEX-ZF2S-1926-SM-4WWAN 50-59 years, female 19.5
GTEX-14E6E-1526-SM-5RQIG 30-39 years, male 19.3
GTEX-TML8-1326-SM-4DXTO 40-49 years, female 19.3
GTEX-11EM3-1526-SM-5A5KN 20-29 years, female 18.9
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 18.9
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

33.0

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 33.0
FF:10014-101C5 62,83,84 years, mixed 33.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.