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ARID1A
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    TISSUE

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    CELL

  • PATHOLOGY

TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation


Dictionary


Tissue proteome

GENERAL INFORMATION

Gene name

ARID1A

Gene description

AT rich interactive domain 1A (SWI-like)

Protein class

Cancer-related genes
Disease related genes
Predicted intracellular proteins
Transcription factors

Predicted localization

Intracellular

Number of transcripts

6
SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:Expressed in all
GTEx:Expressed in all
FANTOM5:Expressed in all

Protein evidence

Evidence at protein level

Protein expression

Ubiquitous nuclear expression.

DATA RELIABILITY

Data reliability
description

Antibody staining mainly consistent with RNA expression data.

Reliability score

Supported based on 2 antibodies.
HPA005456 , CAB016334
SHOW MORE

RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM) Protein expression (score)
Brain
Cerebral cortex
Hippocampus
N/A
Caudate
N/A
Cerebellum
N/A
Endocrine tissues
Thyroid gland
Parathyroid gland
Adrenal gland
Bone marrow & immune system
Appendix
Bone marrow
Lymph node
Tonsil
Spleen
Muscle tissues
Heart muscle
Skeletal muscle
Smooth muscle
Lung
Nasopharynx
N/A
Bronchus
N/A
Lung
Liver & gallbladder
Liver
Gallbladder
Pancreas
Pancreas
Gastrointestinal tract
Oral mucosa
N/A
Salivary gland
Esophagus
Stomach
Duodenum
Small intestine
Colon
Rectum
Kidney & urinary bladder
Kidney
Urinary bladder
Male tissues
Testis
Epididymis
Prostate
Seminal vesicle
Female tissues
Breast
Vagina
N/A
Cervix, uterine
Endometrium
Fallopian tube
Ovary
Placenta
Adipose & soft tissue
Adipose tissue
Soft tissue
N/A
Skin
Skin
Cerebral cortex

Lymph node

Liver

Colon

Kidney

Testis

PROTEIN EXPRESSION OVERVIEW

Organ
Expression
Alphabetical

RNA EXPRESSION OVERVIEW

HPA dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
GTEx dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
FANTOM5 dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all

GENE INFORMATION

Gene name

ARID1A (HGNC Symbol)

Synonyms

B120, BAF250, BAF250a, C10rf4, C1orf4, P270, SMARCF1

Description

AT rich interactive domain 1A (SWI-like) (HGNC Symbol)

Entrez gene summary

This gene encodes a member of the SWI/SNF family, whose members have helicase and ATPase activities and are thought to regulate transcription of certain genes by altering the chromatin structure around those genes. The encoded protein is part of the large ATP-dependent chromatin remodeling complex SNF/SWI, which is required for transcriptional activation of genes normally repressed by chromatin. It possesses at least two conserved domains that could be important for its function. First, it has a DNA-binding domain that can specifically bind an AT-rich DNA sequence known to be recognized by a SNF/SWI complex at the beta-globin locus. Second, the C-terminus of the protein can stimulate glucocorticoid receptor-dependent transcriptional activation. It is thought that the protein encoded by this gene confers specificity to the SNF/SWI complex and may recruit the complex to its targets through either protein-DNA or protein-protein interactions. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]

Chromosome

1

Cytoband

p36.11

Chromosome location (bp)

26696033 - 26782104

Protein evidence

Evidence at protein level (all genes)

Ensembl

ENSG00000117713 (version 83.38)

Entrez gene

8289

UniProt

O14497 (UniProt - Evidence at protein level)

neXtProt

NX_O14497

Antibodypedia

ARID1A antibodies

PROTEIN BROWSER

ARID1A-001
ARID1A-002
ARID1A-003
ARID1A-007
ARID1A-009
ARID1A-201

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)

ARID1A-001
ENSP00000320485
ENST00000324856
O14497 [Direct mapping]
AT-rich interactive domain-containing protein 1A
Show all
Predicted intracellular proteins
Transcription factors
   Helix-turn-helix domains
Cancer-related genes
   Mutated cancer genes
   Mutational cancer driver genes
   COSMIC somatic mutations in cancer genes
   COSMIC Splicing Mutations
   COSMIC Somatic Mutations
   COSMIC Nonsense Mutations
   COSMIC Missense Mutations
   COSMIC Large Deletions
   COSMIC Frameshift Mutations
   COSMIC Translocations
Disease related genes
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000122 [negative regulation of transcription from RNA polymerase II promoter]
GO:0000790 [nuclear chromatin]
GO:0001843 [neural tube closure]
GO:0003205 [cardiac chamber development]
GO:0003408 [optic cup formation involved in camera-type eye development]
GO:0003677 [DNA binding]
GO:0003713 [transcription coactivator activity]
GO:0005488 [binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0006325 [chromatin organization]
GO:0006337 [nucleosome disassembly]
GO:0006338 [chromatin remodeling]
GO:0006344 [maintenance of chromatin silencing]
GO:0006351 [transcription, DNA-templated]
GO:0006357 [regulation of transcription from RNA polymerase II promoter]
GO:0016514 [SWI/SNF complex]
GO:0016922 [ligand-dependent nuclear receptor binding]
GO:0030520 [intracellular estrogen receptor signaling pathway]
GO:0030521 [androgen receptor signaling pathway]
GO:0030900 [forebrain development]
GO:0031491 [nucleosome binding]
GO:0042766 [nucleosome mobilization]
GO:0042921 [glucocorticoid receptor signaling pathway]
GO:0043044 [ATP-dependent chromatin remodeling]
GO:0045893 [positive regulation of transcription, DNA-templated]
GO:0048096 [chromatin-mediated maintenance of transcription]
GO:0055007 [cardiac muscle cell differentiation]
GO:0060674 [placenta blood vessel development]
GO:0071564 [npBAF complex]
GO:0071565 [nBAF complex]
GO:0090544 [BAF-type complex]
GO:1901998 [toxin transport]
Show all
2285 aa
242 kDa
No 0
ARID1A-002
ENSP00000387636
ENST00000457599
O14497 [Direct mapping]
AT-rich interactive domain-containing protein 1A
Show all
Predicted intracellular proteins
Transcription factors
   Helix-turn-helix domains
Cancer-related genes
   Mutated cancer genes
   Mutational cancer driver genes
   COSMIC somatic mutations in cancer genes
   COSMIC Splicing Mutations
   COSMIC Somatic Mutations
   COSMIC Nonsense Mutations
   COSMIC Missense Mutations
   COSMIC Large Deletions
   COSMIC Frameshift Mutations
   COSMIC Translocations
Disease related genes
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000790 [nuclear chromatin]
GO:0003677 [DNA binding]
GO:0003713 [transcription coactivator activity]
GO:0005488 [binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0006337 [nucleosome disassembly]
GO:0006338 [chromatin remodeling]
GO:0006351 [transcription, DNA-templated]
GO:0006357 [regulation of transcription from RNA polymerase II promoter]
GO:0016514 [SWI/SNF complex]
GO:0016922 [ligand-dependent nuclear receptor binding]
GO:0030520 [intracellular estrogen receptor signaling pathway]
GO:0030521 [androgen receptor signaling pathway]
GO:0042766 [nucleosome mobilization]
GO:0042921 [glucocorticoid receptor signaling pathway]
GO:0045893 [positive regulation of transcription, DNA-templated]
GO:0048096 [chromatin-mediated maintenance of transcription]
GO:0071564 [npBAF complex]
GO:0071565 [nBAF complex]
GO:0090544 [BAF-type complex]
Show all
2068 aa
218.3 kDa
No 0
ARID1A-003
ENSP00000363267
ENST00000374152
O14497 [Direct mapping]
AT-rich interactive domain-containing protein 1A
Show all
Predicted intracellular proteins
Transcription factors
   Helix-turn-helix domains
Cancer-related genes
   Mutated cancer genes
   Mutational cancer driver genes
   COSMIC somatic mutations in cancer genes
   COSMIC Splicing Mutations
   COSMIC Somatic Mutations
   COSMIC Nonsense Mutations
   COSMIC Missense Mutations
   COSMIC Large Deletions
   COSMIC Frameshift Mutations
   COSMIC Translocations
Disease related genes
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000790 [nuclear chromatin]
GO:0003677 [DNA binding]
GO:0003713 [transcription coactivator activity]
GO:0005488 [binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0006337 [nucleosome disassembly]
GO:0006338 [chromatin remodeling]
GO:0006351 [transcription, DNA-templated]
GO:0006357 [regulation of transcription from RNA polymerase II promoter]
GO:0016514 [SWI/SNF complex]
GO:0016922 [ligand-dependent nuclear receptor binding]
GO:0030520 [intracellular estrogen receptor signaling pathway]
GO:0030521 [androgen receptor signaling pathway]
GO:0042766 [nucleosome mobilization]
GO:0042921 [glucocorticoid receptor signaling pathway]
GO:0045893 [positive regulation of transcription, DNA-templated]
GO:0048096 [chromatin-mediated maintenance of transcription]
GO:0071564 [npBAF complex]
GO:0071565 [nBAF complex]
GO:0090544 [BAF-type complex]
Show all
1902 aa
205.9 kDa
No 0
ARID1A-007
ENSP00000432473
ENST00000524572
E9PQW6 [Direct mapping]
AT-rich interactive domain-containing protein 1A
Show all
Predicted intracellular proteins
Cancer-related genes
   Mutated cancer genes
   Mutational cancer driver genes
   COSMIC somatic mutations in cancer genes
   COSMIC Splicing Mutations
   COSMIC Somatic Mutations
   COSMIC Nonsense Mutations
   COSMIC Missense Mutations
   COSMIC Large Deletions
   COSMIC Frameshift Mutations
   COSMIC Translocations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0006338 [chromatin remodeling]
GO:0090544 [BAF-type complex]
Show all
123 aa
13.6 kDa
No 0
ARID1A-009
ENSP00000390317
ENST00000430799
H0Y488 [Direct mapping]
AT-rich interactive domain-containing protein 1A
Show all
Predicted intracellular proteins
Cancer-related genes
   Mutated cancer genes
   Mutational cancer driver genes
   COSMIC somatic mutations in cancer genes
   COSMIC Splicing Mutations
   COSMIC Somatic Mutations
   COSMIC Nonsense Mutations
   COSMIC Missense Mutations
   COSMIC Large Deletions
   COSMIC Frameshift Mutations
   COSMIC Translocations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005488 [binding]
GO:0006338 [chromatin remodeling]
GO:0090544 [BAF-type complex]
Show all
1182 aa
129.4 kDa
No 0
ARID1A-201
ENSP00000478955
ENST00000615191
A0A087WUV6 [Direct mapping]
AT-rich interactive domain-containing protein 1A
Show all
Predicted intracellular proteins
Cancer-related genes
   Mutated cancer genes
   Mutational cancer driver genes
   COSMIC somatic mutations in cancer genes
   COSMIC Splicing Mutations
   COSMIC Somatic Mutations
   COSMIC Nonsense Mutations
   COSMIC Missense Mutations
   COSMIC Large Deletions
   COSMIC Frameshift Mutations
   COSMIC Translocations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003677 [DNA binding]
GO:0006338 [chromatin remodeling]
GO:0090544 [BAF-type complex]
Show all
1141 aa
121.7 kDa
No 0

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.