Tissue expression of RPN2 - Summary - The Human Protein Atlas

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RPN2

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TISSUE

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CELL

PATHOLOGY

TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation

Dictionary


Tissue proteome

GENERAL INFORMATION
Gene name	RPN2
Gene description	Ribophorin II
Protein class	Enzymes Plasma proteins Predicted intracellular proteins Predicted membrane proteins Predicted secreted proteins
Predicted localization	Intracellular,Membrane,Secreted
Number of transcripts	6
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HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:	Expressed in all
GTEx:	Expressed in all
FANTOM5:	Expressed in all

Protein evidence

Evidence at protein level

Protein expression

Ubiquitous cytoplasmic expression.

DATA RELIABILITY
Data reliability description	Antibody staining consistent with RNA expression data.
Reliability score	Supported based on 3 antibodies. HPA008297 , HPA025922 , CAB019277
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RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM)

Protein expression (score)

Brain

Cerebral cortex

Hippocampus

N/A

Caudate

N/A

Cerebellum

N/A

Endocrine tissues

Thyroid gland

Parathyroid gland

Adrenal gland

Bone marrow & immune system

Appendix

Bone marrow

Lymph node

Tonsil

Spleen

Muscle tissues

Heart muscle

Skeletal muscle

Smooth muscle

Lung

Nasopharynx

N/A

Bronchus

N/A

Lung

Liver & gallbladder

Liver

Gallbladder

Pancreas

Pancreas

Gastrointestinal tract

Oral mucosa

N/A

Salivary gland

Esophagus

Stomach

Duodenum

Small intestine

Colon

Rectum

Kidney & urinary bladder

Kidney

Urinary bladder

Male tissues

Testis

Epididymis

Prostate

Seminal vesicle

Female tissues

Breast

Vagina

N/A

Cervix, uterine

Endometrium

Fallopian tube

Ovary

Placenta

Adipose & soft tissue

Adipose tissue

Soft tissue

N/A

Skin

Skin

Cerebral cortex

PROTEIN EXPRESSION OVERVIEW
Organ Expression Alphabetical

RNA EXPRESSION OVERVIEW
HPA dataset Organ Expression Alphabetical RNA tissue category: Expressed in all
GTEx dataset Organ Expression Alphabetical RNA tissue category: Expressed in all
FANTOM5 dataset Organ Expression Alphabetical RNA tissue category: Expressed in all

GENE INFORMATION
Gene name	RPN2 (HGNC Symbol)
Synonyms	RIBIIR, RPN-II, RPNII, SWP1
Description	Ribophorin II (HGNC Symbol)
Entrez gene summary	This gene encodes a type I integral membrane protein found only in the rough endoplasmic reticulum. The encoded protein is part of an N-oligosaccharyl transferase complex that links high mannose oligosaccharides to asparagine residues found in the Asn-X-Ser/Thr consensus motif of nascent polypeptide chains. This protein is similar in sequence to the yeast oligosaccharyl transferase subunit SWP1. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Oct 2008]
Chromosome	20
Cytoband	q11.23
Chromosome location (bp)	37178410 - 37241623
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000118705 (version 83.38)
Entrez gene	6185
UniProt	P04844 (UniProt - Evidence at protein level)
neXtProt	NX_P04844
Antibodypedia	RPN2 antibodies

PROTEIN BROWSER

RPN2-001	RPN2-002	RPN2-003	RPN2-004	RPN2-006	RPN2-007

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
RPN2-001 ENSP00000237530 ENST00000237530	P04844 [Direct mapping] Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 Show all	Enzymes ENZYME proteins Transferases Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 3TM proteins predicted by MDM Plasma proteins Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0000421 [autophagosome membrane] GO:0004579 [dolichyl-diphosphooligosaccharide-protein glycotransferase activity] GO:0005634 [nucleus] GO:0005783 [endoplasmic reticulum] GO:0005789 [endoplasmic reticulum membrane] GO:0005791 [rough endoplasmic reticulum] GO:0006412 [translation] GO:0006464 [cellular protein modification process] GO:0006487 [protein N-linked glycosylation] GO:0006614 [SRP-dependent cotranslational protein targeting to membrane] GO:0007568 [aging] GO:0008250 [oligosaccharyltransferase complex] GO:0010467 [gene expression] GO:0016020 [membrane] GO:0016021 [integral component of membrane] GO:0018279 [protein N-linked glycosylation via asparagine] GO:0042493 [response to drug] GO:0043022 [ribosome binding] GO:0043687 [post-translational protein modification] GO:0044267 [cellular protein metabolic process] Show all	631 aa 69.3 kDa	Yes	3
RPN2-002 ENSP00000362735 ENST00000373632	Q5JYR7 [Direct mapping] Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2; Ribophorin II, isoform CRA_d Show all	MEMSAT3 predicted membrane proteins SCAMPI predicted membrane proteins TMHMM predicted membrane proteins Predicted secreted proteins Secreted proteins predicted by MDSEC SignalP predicted secreted proteins Phobius predicted secreted proteins SPOCTOPUS predicted secreted proteins Protein evidence (Ezkurdia et al 2014) Show all	GO:0006487 [protein N-linked glycosylation] GO:0008250 [oligosaccharyltransferase complex] GO:0016021 [integral component of membrane] Show all	345 aa 37.2 kDa	Yes	0
RPN2-003 ENSP00000362724 ENST00000373622	P04844 [Direct mapping] Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 Show all	Enzymes ENZYME proteins Transferases Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 2TM proteins predicted by MDM Plasma proteins Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0004579 [dolichyl-diphosphooligosaccharide-protein glycotransferase activity] GO:0005634 [nucleus] GO:0005783 [endoplasmic reticulum] GO:0005789 [endoplasmic reticulum membrane] GO:0006412 [translation] GO:0006464 [cellular protein modification process] GO:0006487 [protein N-linked glycosylation] GO:0006614 [SRP-dependent cotranslational protein targeting to membrane] GO:0008250 [oligosaccharyltransferase complex] GO:0010467 [gene expression] GO:0016020 [membrane] GO:0016021 [integral component of membrane] GO:0018279 [protein N-linked glycosylation via asparagine] GO:0043687 [post-translational protein modification] GO:0044267 [cellular protein metabolic process] Show all	615 aa 67.7 kDa	Yes	2
RPN2-004 ENSP00000399137 ENST00000456102	Q5JYR4 [Direct mapping] Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all	GO:0006487 [protein N-linked glycosylation] GO:0008250 [oligosaccharyltransferase complex] GO:0016021 [integral component of membrane] Show all	167 aa 18.3 kDa	No	0
RPN2-006 ENSP00000409580 ENST00000437329	Q5JYR3 [Direct mapping] Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 2TM proteins predicted by MDM Protein evidence (Ezkurdia et al 2014) Show all	GO:0006487 [protein N-linked glycosylation] GO:0008250 [oligosaccharyltransferase complex] GO:0016021 [integral component of membrane] Show all	138 aa 15.5 kDa	No	2
RPN2-007 ENSP00000399404 ENST00000456400	H0Y5M1 [Direct mapping] Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Protein evidence (Ezkurdia et al 2014) Show all	GO:0006487 [protein N-linked glycosylation] GO:0008250 [oligosaccharyltransferase complex] GO:0016021 [integral component of membrane] Show all	147 aa 16.8 kDa	No	1

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