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GLE1

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:17.6TPM
GTEx:9.7RPKM
FANTOM5:24.5Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA041689

  

Antibody HPA043538

  

Endothelial cells

 Medium   Medium  

Glandular cells

 High   Medium  

Peripheral nerve/ganglion

 Medium   Low  
   
   
   

COLON - HPA RNA-seq

Average TPM

17.6
overview Male, age 54 Sample 1
TPM: 17.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 15.7
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 14.8
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 16.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 11.4
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 16.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 17.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 17.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 19.2
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 24.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 24.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 20
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 13.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

9.7

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 8.4
Samples: 149

Max RPKM: 12.9
Min RPKM: 4.8
Std RPKM: 1.3
Median RPKM: 8.5
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 12.9
GTEX-Y5LM-1426-SM-5RQJL 40-49 years, female 12.0
GTEX-11P81-1426-SM-5P9JN 30-39 years, female 11.7
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 11.3
GTEX-ZPU1-1726-SM-4WWFV 40-49 years, male 10.8
GTEX-WHWD-1526-SM-4OORV 50-59 years, male 10.7
GTEX-Y9LG-1326-SM-4VBQB 30-39 years, male 10.6
GTEX-ZYFG-1826-SM-5GZWX 60-69 years, female 10.6
GTEX-117YX-0526-SM-5EGJH 50-59 years, male 10.2
GTEX-1477Z-2126-SM-5Q5CM 60-69 years, male 10.2
Show all
Colon - Transverse
RPKM: 10.7
Samples: 196

Max RPKM: 16.5
Min RPKM: 3.0
Std RPKM: 2.4
Median RPKM: 10.8
GTEX-WFG7-1526-SM-4LVMG 20-29 years, male 16.5
GTEX-OXRK-1726-SM-3NB16 50-59 years, female 15.5
GTEX-R53T-1326-SM-48FCQ 50-59 years, female 15.2
GTEX-XMK1-1726-SM-4B64Z 40-49 years, male 15.2
GTEX-139YR-2126-SM-5KM11 50-59 years, male 14.9
GTEX-WHWD-1226-SM-4OOS1 50-59 years, male 14.9
GTEX-132AR-2726-SM-5PNVN 50-59 years, female 14.8
GTEX-111CU-1426-SM-5GZYP 50-59 years, male 14.7
GTEX-Y5LM-1526-SM-4VDTA 40-49 years, female 14.6
GTEX-144GN-1126-SM-5LU33 50-59 years, male 14.5
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

24.5

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 24.5
FF:10014-101C5 62,83,84 years, mixed 24.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.