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HDHD3

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:41.7TPM
GTEx:29.5RPKM
FANTOM5:57.3Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:High
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA020427

  

Antibody HPA024158

  

Antibody HPA024585

  

Endothelial cells

 Not detected   Not detected   Not detected  

Glandular cells

 High   Medium   High  

Peripheral nerve/ganglion

 Low   Not detected   Medium  
     
     
     

COLON - HPA RNA-seq

Average TPM

41.7
overview Male, age 54 Sample 1
TPM: 47.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 26.7
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 34.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 52
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 14.6
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 27.3
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 41.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 58.8
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 34.6
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 49.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 45.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 48.2
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 60.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

29.5

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 11.0
Samples: 149

Max RPKM: 29.2
Min RPKM: 2.5
Std RPKM: 4.2
Median RPKM: 10.2
GTEX-Y5LM-1426-SM-5RQJL 40-49 years, female 29.2
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 28.0
GTEX-V955-1726-SM-4JBHF 60-69 years, male 27.0
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 22.3
GTEX-11ONC-1926-SM-5GU75 60-69 years, male 21.7
GTEX-14A5H-1626-SM-5SIAN 60-69 years, male 19.9
GTEX-11TUW-2326-SM-5EQMO 60-69 years, male 19.8
GTEX-WQUQ-2626-SM-4MVNP 60-69 years, male 18.6
GTEX-ZC5H-2426-SM-4WAZ6 40-49 years, female 18.0
GTEX-12WSL-1826-SM-5LZW9 50-59 years, male 16.9
Show all
Colon - Transverse
RPKM: 43.7
Samples: 196

Max RPKM: 111.3
Min RPKM: 3.3
Std RPKM: 26.2
Median RPKM: 49.6
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 111.3
GTEX-14E6E-1526-SM-5RQIG 30-39 years, male 94.1
GTEX-1122O-1526-SM-5N9CL 60-69 years, female 92.1
GTEX-R55D-1826-SM-48FEF 50-59 years, male 91.5
GTEX-U3ZN-2126-SM-4DXU1 30-39 years, female 90.6
GTEX-13111-0726-SM-5DUVE 50-59 years, male 86.6
GTEX-XUJ4-2026-SM-4BOOW 60-69 years, female 86.3
GTEX-UJHI-1126-SM-4IHLN 50-59 years, female 85.8
GTEX-Y5LM-1526-SM-4VDTA 40-49 years, female 84.4
GTEX-P4QT-1426-SM-3NMCX 50-59 years, female 83.9
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

57.3

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 57.3
FF:10014-101C5 62,83,84 years, mixed 57.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.