Fields »
ABOUT
HELP
BLOG
PGF

COLON - Expression summary

RNA expression
HPA:3.0TPM
GTEx:4.0RPKM
FANTOM5:3.4Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

3.0
overview Male, age 54 Sample 1
TPM: 3.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 1.4
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 7.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 5.2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 2.5
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 2.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 1.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 3.9
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 1.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 2.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 3.9
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 2.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

4.0

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 3.8
Samples: 149

Max RPKM: 36.2
Min RPKM: 0.7
Std RPKM: 3.7
Median RPKM: 2.8
GTEX-WFG7-1626-SM-4LVMF 20-29 years, male 36.2
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 19.6
GTEX-WFON-1326-SM-4LVMN 40-49 years, male 13.8
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 12.1
GTEX-12WSL-1826-SM-5LZW9 50-59 years, male 11.3
GTEX-1211K-1826-SM-5EGJ2 60-69 years, female 10.7
GTEX-11TUW-2326-SM-5EQMO 60-69 years, male 9.9
GTEX-ZTSS-1226-SM-51MSZ 40-49 years, male 9.3
GTEX-YF7O-1626-SM-5IFII 50-59 years, male 8.4
GTEX-139T6-1426-SM-5P9J7 50-59 years, male 7.6
Show all
Colon - Transverse
RPKM: 4.1
Samples: 196

Max RPKM: 19.4
Min RPKM: 1.0
Std RPKM: 2.9
Median RPKM: 3.1
GTEX-14C38-2626-SM-5RQI4 50-59 years, male 19.4
GTEX-13OVI-2026-SM-5J1MU 60-69 years, female 18.0
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 16.7
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 15.4
GTEX-WEY5-1426-SM-4LMJ3 40-49 years, female 14.3
GTEX-12WSJ-1526-SM-5GCNI 40-49 years, female 13.8
GTEX-13O3P-2326-SM-5KM55 50-59 years, male 11.8
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 9.8
GTEX-14BMV-2426-SM-5S2PP 50-59 years, male 9.6
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 9.5
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

3.4

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 3.4
FF:10014-101C5 62,83,84 years, mixed 3.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.