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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:672.2TPM
GTEx:156.4RPKM
FANTOM5:1116.8Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:High
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA026761

  

Antibody CAB003809

  

Antibody CAB030012

  

Antibody CAB055098

  

Endothelial cells

 Not detected   Not detected   Not detected   Not detected  

Glandular cells

 High   High   High   High  

Peripheral nerve/ganglion

 Not detected   Not detected   Not detected  
       
       
       

COLON - HPA RNA-seq

Average TPM

672.2
overview Male, age 54 Sample 1
TPM: 789.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 626.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 587.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 1012.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 401.7
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 398.4
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 679.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 750.6
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 456.1
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 874.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 910.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 654.4
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 596.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

156.4

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 3.9
Samples: 149

Max RPKM: 84.7
Min RPKM: 0.0
Std RPKM: 10.8
Median RPKM: 0.5
GTEX-XBED-1726-SM-47JYO 60-69 years, male 84.7
GTEX-Y5LM-1426-SM-5RQJL 40-49 years, female 53.3
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 51.8
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 40.9
GTEX-ZPCL-1626-SM-57WGC 60-69 years, female 32.1
GTEX-V955-1726-SM-4JBHF 60-69 years, male 30.7
GTEX-11EQ9-1526-SM-5PNY7 30-39 years, male 30.5
GTEX-WQUQ-2626-SM-4MVNP 60-69 years, male 25.2
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 21.3
GTEX-11ONC-1926-SM-5GU75 60-69 years, male 18.3
Show all
Colon - Transverse
RPKM: 272.3
Samples: 196

Max RPKM: 853.2
Min RPKM: 0.1
Std RPKM: 220.3
Median RPKM: 299.7
GTEX-132AR-2726-SM-5PNVN 50-59 years, female 853.2
GTEX-14E6E-1526-SM-5RQIG 30-39 years, male 850.2
GTEX-1122O-1526-SM-5N9CL 60-69 years, female 754.2
GTEX-111CU-1426-SM-5GZYP 50-59 years, male 658.7
GTEX-ZVT2-1926-SM-5GU5T 50-59 years, female 649.9
GTEX-117YW-1826-SM-5PNY5 50-59 years, male 626.6
GTEX-145MN-1726-SM-5SIA6 30-39 years, male 620.1
GTEX-ZT9W-1826-SM-51MQX 50-59 years, male 606.5
GTEX-ZLV1-1226-SM-4WWBX 60-69 years, female 605.9
GTEX-ZYWO-1626-SM-5E44H 40-49 years, female 605.1
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

1116.8

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 1116.8
FF:10014-101C5 62,83,84 years, mixed 1116.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.