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COLON - Expression summary

RNA expression
HPA:0.2TPM
GTEx:0.1RPKM
FANTOM5:0.3Tags Per Million

COLON - Annotated protein expression
 

Antibody staining

Antibody HPA026726

  

Antibody HPA026764

  

Antibody CAB010907

  

Endothelial cells

 Low   Low   High  

Glandular cells

 Medium   Medium   High  

Peripheral nerve/ganglion

 Medium  
        
     
     
     

COLON - HPA RNA-seq

Average TPM

0.2
overview Male, age 54 Sample 1
TPM: 0
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 0
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 0.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 0
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 0
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 0.2
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 0.1
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 0.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 0.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 0.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 0.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 0.3
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 0.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

0.1

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 0.2
Samples: 149

Max RPKM: 4.3
Min RPKM: 0.0
Std RPKM: 0.4
Median RPKM: 0.1
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 4.3
GTEX-145MH-2726-SM-5QGQ6 50-59 years, male 1.4
GTEX-117XS-2226-SM-5GIE1 60-69 years, male 1.2
GTEX-YECK-2826-SM-5IFHF 60-69 years, male 0.9
GTEX-11GS4-1826-SM-5HL4T 60-69 years, male 0.8
GTEX-12ZZY-2726-SM-5EQ45 60-69 years, male 0.8
GTEX-145MO-2626-SM-5QGPD 60-69 years, male 0.8
GTEX-139TS-2226-SM-5J2N1 60-69 years, male 0.7
GTEX-11PRG-2026-SM-5GU5F 50-59 years, male 0.6
GTEX-147JS-2626-SM-5S2UX 60-69 years, male 0.6
Show all
Colon - Transverse
RPKM: 0.1
Samples: 196

Max RPKM: 1.5
Min RPKM: 0.0
Std RPKM: 0.2
Median RPKM: 0.0
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 1.5
GTEX-11O72-2226-SM-5PNW2 40-49 years, male 1.2
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 1.0
GTEX-147JS-2526-SM-5S2Q8 60-69 years, male 0.9
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 0.8
GTEX-14BMV-2426-SM-5S2PP 50-59 years, male 0.7
GTEX-111VG-2226-SM-5N9DU 60-69 years, male 0.6
GTEX-12KS4-2426-SM-5LU8P 30-39 years, male 0.6
GTEX-PX3G-1426-SM-48U1J 20-29 years, female 0.5
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 0.5
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

0.3

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 0.3
FF:10014-101C5 62,83,84 years, mixed 0.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.