Fields »
ABOUT
HELP
BLOG
HSPH1

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:19.9TPM
GTEx:20.8RPKM
FANTOM5:41.3Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:High
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA028675

  

Antibody CAB002060

  

Endothelial cells

 Not detected   Not detected  

Glandular cells

 Low   High  

Peripheral nerve/ganglion

 Medium  
   
   
   

COLON - HPA RNA-seq

Average TPM

19.9
overview Male, age 54 Sample 1
TPM: 14.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 15.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 15.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 19.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 19.9
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 33.9
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 20.1
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 17.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 19.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 24.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 21.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 21.9
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 14.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

20.8

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 19.2
Samples: 149

Max RPKM: 247.5
Min RPKM: 6.5
Std RPKM: 22.7
Median RPKM: 14.1
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 247.5
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 101.5
GTEX-ZF28-2526-SM-57WFH 60-69 years, male 80.8
GTEX-11PRG-2026-SM-5GU5F 50-59 years, male 68.2
GTEX-12ZZW-2426-SM-5DUWE 50-59 years, male 62.7
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 62.2
GTEX-ZDTS-2726-SM-5L3E2 60-69 years, male 58.9
GTEX-131XE-1026-SM-5EGKE 50-59 years, male 36.8
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 32.3
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 31.9
Show all
Colon - Transverse
RPKM: 22.0
Samples: 196

Max RPKM: 560.9
Min RPKM: 5.7
Std RPKM: 43.5
Median RPKM: 13.4
GTEX-117YW-1826-SM-5PNY5 50-59 years, male 560.9
GTEX-14C38-2626-SM-5RQI4 50-59 years, male 192.7
GTEX-132AR-2726-SM-5PNVN 50-59 years, female 116.1
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 95.1
GTEX-Q734-1126-SM-48TZY 40-49 years, female 94.9
GTEX-13S86-1626-SM-5Q5C5 40-49 years, male 73.5
GTEX-R53T-1326-SM-48FCQ 50-59 years, female 69.6
GTEX-XV7Q-2126-SM-4BRVX 40-49 years, female 67.4
GTEX-11EQ9-1426-SM-5987G 30-39 years, male 66.6
GTEX-OXRK-1726-SM-3NB16 50-59 years, female 65.7
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

41.3

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 41.3
FF:10014-101C5 62,83,84 years, mixed 41.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.