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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:387.6TPM
GTEx:128.7RPKM
FANTOM5:575.0Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Not detected
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA000572

  

Antibody CAB000476

  

Antibody CAB016253

  

Endothelial cells

 Not detected   Not detected   Not detected  

Glandular cells

 Not detected   Not detected   Not detected  

Peripheral nerve/ganglion

 Not detected   Not detected   Not detected  
     
     
     

COLON - HPA RNA-seq

Average TPM

387.6
overview Male, age 54 Sample 1
TPM: 234
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 364.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 107
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 578
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 758.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 766.2
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 287.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 91.4
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 613.8
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 179.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 304.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 391.5
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 362.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

128.7

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 190.6
Samples: 149

Max RPKM: 522.2
Min RPKM: 66.7
Std RPKM: 72.9
Median RPKM: 180.4
GTEX-ZDTS-2726-SM-5L3E2 60-69 years, male 522.2
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 493.9
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 391.3
GTEX-13OVJ-1826-SM-5KM2D 50-59 years, female 382.3
GTEX-147GR-2826-SM-5RQK8 60-69 years, male 337.9
GTEX-ZAB4-2426-SM-5HL8A 40-49 years, male 328.8
GTEX-12ZZW-2426-SM-5DUWE 50-59 years, male 321.1
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 320.2
GTEX-WI4N-2226-SM-4OOS9 40-49 years, female 306.2
GTEX-145LS-2926-SM-5O99G 60-69 years, female 305.9
Show all
Colon - Transverse
RPKM: 81.7
Samples: 196

Max RPKM: 320.1
Min RPKM: 6.3
Std RPKM: 70.9
Median RPKM: 56.5
GTEX-Z93S-2426-SM-5HL8N 50-59 years, male 320.1
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 276.6
GTEX-14BMV-2426-SM-5S2PP 50-59 years, male 276.4
GTEX-117YX-0826-SM-5H11J 50-59 years, male 269.4
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 243.2
GTEX-12ZZZ-2426-SM-5GCNN 60-69 years, male 239.3
GTEX-13FHP-2426-SM-5KLZ5 50-59 years, male 237.6
GTEX-13O3P-2326-SM-5KM55 50-59 years, male 235.7
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 235.5
GTEX-QLQ7-1126-SM-4R1KN 60-69 years, male 233.5
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

575.0

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 575.0
FF:10014-101C5 62,83,84 years, mixed 575.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.