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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:84.2TPM
GTEx:28.9RPKM
FANTOM5:179.4Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Not detected
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA051282

  

Antibody HPA055838

  

Antibody CAB001515

  

Endothelial cells

 Not detected   Not detected   Not detected  

Glandular cells

 Not detected   Not detected   Low  

Peripheral nerve/ganglion

 Not detected   Not detected   Not detected  
     
     
     

COLON - HPA RNA-seq

Average TPM

84.2
overview Male, age 54 Sample 1
TPM: 74.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 67.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 63.1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 93.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 34.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 105
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 123.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 85.6
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 74.6
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 89.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 90.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 117
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 75.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

28.9

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 23.3
Samples: 149

Max RPKM: 41.5
Min RPKM: 4.2
Std RPKM: 7.0
Median RPKM: 23.4
GTEX-XV7Q-2226-SM-4BRVY 40-49 years, female 41.5
GTEX-14E6E-1726-SM-5S2R6 30-39 years, male 41.3
GTEX-14BMU-1326-SM-5RQIH 20-29 years, female 39.6
GTEX-ZAB5-1426-SM-5HL9D 50-59 years, male 39.6
GTEX-13D11-0626-SM-5LZYY 50-59 years, female 36.2
GTEX-XUW1-1826-SM-4BOQD 50-59 years, female 35.7
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 35.2
GTEX-1399R-2126-SM-5K7WZ 30-39 years, male 34.9
GTEX-WHWD-1526-SM-4OORV 50-59 years, male 34.7
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 34.4
Show all
Colon - Transverse
RPKM: 33.2
Samples: 196

Max RPKM: 63.5
Min RPKM: 8.1
Std RPKM: 10.3
Median RPKM: 32.7
GTEX-13S86-1626-SM-5Q5C5 40-49 years, male 63.5
GTEX-WFG7-1526-SM-4LVMG 20-29 years, male 62.7
GTEX-R53T-1326-SM-48FCQ 50-59 years, female 59.8
GTEX-13D11-0826-SM-5KLZJ 50-59 years, female 55.6
GTEX-145LT-0926-SM-5LU9C 40-49 years, male 53.3
GTEX-XMK1-1726-SM-4B64Z 40-49 years, male 52.1
GTEX-XUJ4-2026-SM-4BOOW 60-69 years, female 51.9
GTEX-XV7Q-2126-SM-4BRVX 40-49 years, female 51.9
GTEX-11EM3-1526-SM-5A5KN 20-29 years, female 51.5
GTEX-Y3IK-1826-SM-4WWDS 50-59 years, female 51.0
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

179.4

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 179.4
FF:10014-101C5 62,83,84 years, mixed 179.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.