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LDB3

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:7.7TPM
GTEx:11.5RPKM
FANTOM5:33.1Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Not detected
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA048955

  

Endothelial cells

 Not detected  

Glandular cells

 Not detected  

Peripheral nerve/ganglion

 Not detected  
 
 
 

COLON - HPA RNA-seq

Average TPM

7.7
overview Male, age 54 Sample 1
TPM: 1.9
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 2.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 0.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 8.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 3.2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 42.7
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 3.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 1.5
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 13.9
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 1.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 5.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 9
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 5.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

11.5

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 17.7
Samples: 149

Max RPKM: 52.9
Min RPKM: 3.8
Std RPKM: 8.1
Median RPKM: 15.5
GTEX-13CF2-1826-SM-5N9GK 60-69 years, male 52.9
GTEX-11EMC-1426-SM-5N9E4 60-69 years, female 39.1
GTEX-11ZTS-1526-SM-5N9G7 60-69 years, female 36.4
GTEX-145MH-2726-SM-5QGQ6 50-59 years, male 34.9
GTEX-12ZZX-2726-SM-5N9FT 40-49 years, female 34.0
GTEX-139TS-2226-SM-5J2N1 60-69 years, male 34.0
GTEX-13G51-2126-SM-5IJD9 60-69 years, male 33.2
GTEX-ZVT3-2826-SM-5GU6A 60-69 years, female 32.7
GTEX-YJ8O-1426-SM-5PNV9 40-49 years, female 32.4
GTEX-12WSD-2626-SM-5EGJE 60-69 years, female 31.9
Show all
Colon - Transverse
RPKM: 6.8
Samples: 196

Max RPKM: 37.3
Min RPKM: 0.3
Std RPKM: 6.6
Median RPKM: 4.5
GTEX-11GSP-1626-SM-5986N 60-69 years, female 37.3
GTEX-SNMC-1126-SM-4DM5M 20-29 years, male 25.8
GTEX-11ZVC-2126-SM-5EGJ1 50-59 years, female 25.4
GTEX-13FHP-2426-SM-5KLZ5 50-59 years, male 24.9
GTEX-11ONC-2026-SM-5HL61 60-69 years, male 24.5
GTEX-ZYFC-2626-SM-5NQ6S 50-59 years, male 22.9
GTEX-XAJ8-0426-SM-47JYJ 40-49 years, male 21.4
GTEX-13W3W-2126-SM-5K7UX 60-69 years, female 20.8
GTEX-13U4I-2426-SM-5LU34 40-49 years, female 20.6
GTEX-P78B-1726-SM-3P5ZV 40-49 years, female 18.9
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

33.1

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 33.1
FF:10014-101C5 62,83,84 years, mixed 33.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.