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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:118.8TPM
GTEx:46.1RPKM
FANTOM5:284.5Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Medium
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA050918

  

Antibody HPA054667

  

Endothelial cells

 Not detected   Not detected  

Glandular cells

 Medium   Medium  

Peripheral nerve/ganglion

 Low   Not detected  
   
   
   

COLON - HPA RNA-seq

Average TPM

118.8
overview Male, age 54 Sample 1
TPM: 180.4
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 119.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 131.4
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 154
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 108.7
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 102.6
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 136.5
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 104.1
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 92.8
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 119
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 107.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 113.9
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 74.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

46.1

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 40.8
Samples: 149

Max RPKM: 68.4
Min RPKM: 27.9
Std RPKM: 6.6
Median RPKM: 39.4
GTEX-1399U-2226-SM-5KLZI 50-59 years, female 68.4
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 55.7
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 55.7
GTEX-ZT9W-1726-SM-51MS3 50-59 years, male 55.1
GTEX-11DXX-1926-SM-5EGJK 60-69 years, female 55.0
GTEX-11P81-1426-SM-5P9JN 30-39 years, female 54.7
GTEX-11EI6-2626-SM-5PNVT 60-69 years, male 53.6
GTEX-ZPCL-1626-SM-57WGC 60-69 years, female 53.6
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 52.8
GTEX-ZLFU-1426-SM-4WWEU 40-49 years, male 52.4
Show all
Colon - Transverse
RPKM: 50.1
Samples: 196

Max RPKM: 94.2
Min RPKM: 27.2
Std RPKM: 9.8
Median RPKM: 50.0
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 94.2
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 81.1
GTEX-TML8-1326-SM-4DXTO 40-49 years, female 73.9
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 72.9
GTEX-XV7Q-2126-SM-4BRVX 40-49 years, female 71.2
GTEX-1128S-1626-SM-5H12O 60-69 years, female 69.7
GTEX-QDVN-1326-SM-48TZ3 50-59 years, male 69.7
GTEX-144GN-1126-SM-5LU33 50-59 years, male 69.6
GTEX-SNOS-1226-SM-4DM5H 40-49 years, male 68.9
GTEX-Y3IK-1826-SM-4WWDS 50-59 years, female 68.6
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

284.5

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 284.5
FF:10014-101C5 62,83,84 years, mixed 284.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.