Tissue expression of NECAB1 - Staining in cerebral cortex - The Human Protein Atlas

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NECAB1

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TISSUE

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CELL

PATHOLOGY

TISSUE ATLAS PRIMARY DATA CEREBRAL CORTEX
MOUSE BRAIN

GENE/PROTEIN

Antibody validation

Dictionary
	Cerebral cortex


Tissue proteome
	Brain
	Extended brain samples

CEREBRAL CORTEX - Expression summary

Protein expression

h

m

l

n

RNA expression

HPA:	79.9	TPM
GTEx:	9.2	RPKM

CEREBRAL CORTEX - Annotated protein expression

Annotated protein
expression

Endothelial cells:	Not detected
Glial cells:	Medium
Neuronal cells:	High
Neuropil:	Medium

Antibody staining	Antibody HPA023252		Antibody HPA023629		Antibody HPA025963		Antibody HPA031262		Antibody CAB068208		Antibody CAB068209		Antibody CAB068210
Endothelial cells	Not detected		Not detected		Not detected		Low		Not detected		Not detected		Not detected
Glial cells	Not detected		Not detected		Low		Not detected		Medium		Medium		Medium
Neuronal cells	High		Medium		High		High		High		High		High
Neuropil	Medium		Low		Low		Medium		High		Medium		Medium

CEREBRAL CORTEX - HPA RNA-seq

Average TPM	79.9

N/A

Male, age 5

Sample 1
TPM: 80.7

overview

Female, age 40

Sample 2
TPM: 45.3

Cell types%

Neuronal cells: 35
Glial cells and endothelial cells: 65

overview

Male, age 70

Sample 3
TPM: 113.8

Cell types%

Neuronal cells: 35
Glial cells and endothelial cells: 65

CEREBRAL CORTEX - GTEx RNA-seq

Average RPKM	9.2

GTEx sample id

Sample description

RPKM

Brain - Cortex
RPKM: 7.2

Samples: 114

Max RPKM: 19.5
Min RPKM: 0.2
Std RPKM: 3.7
Median RPKM: 6.9

GTEX-PVOW-2526-SM-2XCF7

40-49 years, male

19.5

GTEX-13NYC-2826-SM-5K7WR

60-69 years, male

15.4

GTEX-X585-3026-SM-46MWF

50-59 years, male

14.9

GTEX-11ZUS-2926-SM-5FQSL

30-39 years, male

14.6

GTEX-QMR6-1426-SM-32PLA

50-59 years, male

14.6

GTEX-WWYW-3126-SM-3NB39

50-59 years, female

14.1

GTEX-T2IS-3026-SM-32QPM

20-29 years, female

12.8

GTEX-12ZZX-2926-SM-5GCOQ

40-49 years, female

12.6

GTEX-UTHO-3026-SM-3GAFB

60-69 years, male

12.6

GTEX-WL46-2926-SM-3LK82

50-59 years, male

12.6

Show all

Brain - Frontal Cortex (BA9)
RPKM: 11.4

Samples: 108

Max RPKM: 34.3
Min RPKM: 0.1
Std RPKM: 8.2
Median RPKM: 9.5

GTEX-X585-0011-R10A-SM-46MUY

50-59 years, male

34.3

GTEX-WL46-0011-R10A-SM-3MJFQ

50-59 years, male

32.3

GTEX-QDT8-0011-R10A-SM-32PKG

30-39 years, female

31.6

GTEX-QVJO-0011-R10A-SM-2S1QJ

60-69 years, female

30.7

GTEX-Q2AG-0011-R10A-SM-2HMLA

40-49 years, female

29.1

GTEX-WVLH-0011-R10A-SM-3MJFM

50-59 years, male

27.4

GTEX-12WSE-0011-R10b-SM-5P9JV

20-29 years, male

26.9

GTEX-131YS-0011-R10b-SM-5EQ5N

60-69 years, female

25.4

GTEX-T6MN-0011-R10A-SM-32QP7

50-59 years, male

25.3

GTEX-Y8DK-0011-R10A-SM-4SOK1

60-69 years, male

23.7

Show all

CEREBRAL CORTEX - FANTOM5 CAGE
No Fantom CAGE analysis found for this gene / tissue

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.