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LRRFIP1

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:39.1TPM
GTEx:22.6RPKM
FANTOM5:74.0Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA006979

  

Endothelial cells

 Medium  

Glandular cells

 Medium  

Peripheral nerve/ganglion

 Not detected  
 

COLON - HPA RNA-seq

Average TPM

39.1
overview Male, age 54 Sample 1
TPM: 35.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 35.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 32.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 46.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 28.6
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 61
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 34.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 38.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 48.4
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 31.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 51
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 42.7
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 22.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

22.6

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 26.1
Samples: 149

Max RPKM: 55.8
Min RPKM: 16.0
Std RPKM: 5.5
Median RPKM: 25.3
GTEX-ZDTS-2726-SM-5L3E2 60-69 years, male 55.8
GTEX-14C5O-2626-SM-5RQI5 60-69 years, male 51.9
GTEX-XAJ8-0726-SM-47JY5 40-49 years, male 46.9
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 42.0
GTEX-11ZU8-1126-SM-5EQ5K 60-69 years, male 39.4
GTEX-12WSG-2426-SM-5EQLZ 50-59 years, female 38.1
GTEX-12ZZW-2426-SM-5DUWE 50-59 years, male 38.1
GTEX-ZXES-1726-SM-5E43G 30-39 years, female 36.1
GTEX-ZAB5-1426-SM-5HL9D 50-59 years, male 34.3
GTEX-11I78-1326-SM-5PNY9 50-59 years, female 33.1
Show all
Colon - Transverse
RPKM: 20.0
Samples: 196

Max RPKM: 42.9
Min RPKM: 9.8
Std RPKM: 5.6
Median RPKM: 19.1
GTEX-XAJ8-0426-SM-47JYJ 40-49 years, male 42.9
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 40.4
GTEX-14C38-2626-SM-5RQI4 50-59 years, male 40.0
GTEX-14AS3-1126-SM-5Q5CR 40-49 years, female 37.7
GTEX-13CF3-1426-SM-5K7YY 60-69 years, female 37.5
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 32.9
GTEX-14ICL-1226-SM-5S2RD 30-39 years, male 32.6
GTEX-145LS-2726-SM-5Q5D8 60-69 years, female 30.5
GTEX-ZV6S-1226-SM-59HLH 40-49 years, female 30.5
GTEX-Z93S-2426-SM-5HL8N 50-59 years, male 29.1
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

74.0

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 74.0
FF:10014-101C5 62,83,84 years, mixed 74.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.