We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Cancer

Specificity

Tissue

Detectable

Cell line

Detectable

Cancer

Detectable

Cancer

Prognosis

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • HUMAN PATHOLOGY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
CANX
  • premium

    TISSUE

  • premium

    CELL

  • PATHOLOGY

TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:64.4RPKM
FANTOM5:428.0Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:High
Neuronal cells:High
 
 

Antibody staining

Antibody HPA009433

 

Antibody HPA009696

 

Antibody CAB004738

 

Glial cells

High   Medium   High  

Neuronal cells

High   Medium  
        
     
     
     

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

64.4

GTEx sample id

Sample description

RPKM

Brain - Caudate (basal ganglia)
RPKM: 64.4
Samples: 117

Max RPKM: 112.8
Min RPKM: 26.7
Std RPKM: 16.0
Median RPKM: 62.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 112.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 101.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 101.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 99.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 99.1
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 92.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 91.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 90.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 89.8
GTEX-12WSB-0011-R5b-SM-5GU67 60-69 years, female 89.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 86.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 86.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 85.5
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 85.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 84.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 84.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 82.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 82.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 81.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 78.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 77.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 77.5
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 77.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 76.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 76.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 76.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 76.0
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 75.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 75.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 73.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 72.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 72.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 72.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 72.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 71.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 71.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 71.4
GTEX-OHPN-0011-R5A-SM-2I5FF 60-69 years, female 71.1
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 70.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 70.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 70.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 69.9
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 68.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 68.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 68.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 67.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 67.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 66.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 66.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 66.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 65.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 65.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 65.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 63.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 63.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 63.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 63.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 62.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 62.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 62.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 62.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 61.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 61.1
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 61.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 60.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 60.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 60.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 59.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 59.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 58.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 58.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 57.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 57.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 57.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 57.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 56.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 56.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 56.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 56.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 56.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 56.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 56.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 55.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 55.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 55.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 54.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 54.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 54.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 53.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 53.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 53.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 52.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 52.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 52.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 51.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 51.7
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 51.5
GTEX-RVPU-0011-R5A-SM-2XCAD 50-59 years, male 50.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 50.5
GTEX-XOTO-0011-R5A-SM-4B657 50-59 years, male 49.7
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 48.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 47.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 46.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 45.7
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 45.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 45.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 44.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 44.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 44.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 43.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 42.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 38.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 36.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 34.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 33.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 30.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 26.7
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

428.0

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 494.6
FF:10164-103B2 76 years, female 494.6

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.