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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:204.1TPM
GTEx:65.9RPKM
FANTOM5:497.7Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:High
Glandular cells:High
Peripheral nerve/ganglion:High
 

Antibody staining

Antibody HPA009433

  

Antibody HPA009696

  

Antibody CAB004738

  

Endothelial cells

 High   Medium   High  

Glandular cells

 High   Medium   High  

Peripheral nerve/ganglion

 High   High   High  
     
     
     

COLON - HPA RNA-seq

Average TPM

204.1
overview Male, age 54 Sample 1
TPM: 205.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 209.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 216.7
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 168.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 204.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 179.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 231.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 194.9
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 199.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 235
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 270.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 200
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 139.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

65.9

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 63.8
Samples: 149

Max RPKM: 157.6
Min RPKM: 35.0
Std RPKM: 14.6
Median RPKM: 62.7
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 157.6
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 96.6
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 93.4
GTEX-14BMU-1326-SM-5RQIH 20-29 years, female 86.4
GTEX-WI4N-2226-SM-4OOS9 40-49 years, female 86.3
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 86.2
GTEX-14E6E-1726-SM-5S2R6 30-39 years, male 85.0
GTEX-13FH7-1626-SM-5J2O9 50-59 years, female 84.0
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 83.3
GTEX-XAJ8-0726-SM-47JY5 40-49 years, male 82.8
Show all
Colon - Transverse
RPKM: 67.4
Samples: 196

Max RPKM: 125.8
Min RPKM: 38.6
Std RPKM: 13.5
Median RPKM: 66.3
GTEX-132AR-2726-SM-5PNVN 50-59 years, female 125.8
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 122.7
GTEX-XAJ8-0426-SM-47JYJ 40-49 years, male 104.2
GTEX-ZV6S-1226-SM-59HLH 40-49 years, female 97.4
GTEX-U4B1-1126-SM-4DXV3 40-49 years, male 96.4
GTEX-144GN-1126-SM-5LU33 50-59 years, male 95.5
GTEX-QDVN-1326-SM-48TZ3 50-59 years, male 95.2
GTEX-11EM3-1526-SM-5A5KN 20-29 years, female 94.0
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 94.0
GTEX-PWOO-1326-SM-48TCJ 40-49 years, female 92.9
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

497.7

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 497.7
FF:10014-101C5 62,83,84 years, mixed 497.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.