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EMC6

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:18.9TPM
GTEx:4.5RPKM
FANTOM5:59.5Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:Medium
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA062681

  

Endothelial cells

 Low  

Glandular cells

 Medium  

Peripheral nerve/ganglion

 Not detected  
 
 
 

COLON - HPA RNA-seq

Average TPM

18.9
overview Male, age 54 Sample 1
TPM: 37.5
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 27.3
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 31.4
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 29.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 20.9
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 10.5
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 11.5
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 10.5
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 13
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 12.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 10.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 16.4
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 13.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

4.5

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 4.4
Samples: 149

Max RPKM: 8.6
Min RPKM: 1.7
Std RPKM: 1.3
Median RPKM: 4.0
GTEX-ZF28-2526-SM-57WFH 60-69 years, male 8.6
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 8.2
GTEX-XAJ8-0726-SM-47JY5 40-49 years, male 7.8
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 7.7
GTEX-13FTW-2126-SM-5K7YG 40-49 years, male 7.5
GTEX-WQUQ-2626-SM-4MVNP 60-69 years, male 7.5
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 7.4
GTEX-1399U-2226-SM-5KLZI 50-59 years, female 7.2
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 7.1
GTEX-ZAB5-1426-SM-5HL9D 50-59 years, male 7.0
Show all
Colon - Transverse
RPKM: 4.6
Samples: 196

Max RPKM: 9.2
Min RPKM: 1.8
Std RPKM: 1.3
Median RPKM: 4.5
GTEX-XV7Q-2126-SM-4BRVX 40-49 years, female 9.2
GTEX-13W3W-2126-SM-5K7UX 60-69 years, female 8.3
GTEX-Y3IK-1826-SM-4WWDS 50-59 years, female 8.2
GTEX-Q734-1126-SM-48TZY 40-49 years, female 8.1
GTEX-OXRK-1726-SM-3NB16 50-59 years, female 7.9
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 7.7
GTEX-QMRM-1226-SM-447C6 50-59 years, male 7.7
GTEX-131XG-1826-SM-5LZV4 50-59 years, female 7.3
GTEX-QLQW-0426-SM-447A7 30-39 years, male 7.2
GTEX-U4B1-1126-SM-4DXV3 40-49 years, male 7.1
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

59.5

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 59.5
FF:10014-101C5 62,83,84 years, mixed 59.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.