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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:59.0TPM
GTEx:36.5RPKM
FANTOM5:128.6Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Medium
 

Antibody staining

Antibody HPA001240

  

Endothelial cells

 Not detected  

Glandular cells

 Medium  
 

COLON - HPA RNA-seq

Average TPM

59.0
overview Male, age 54 Sample 1
TPM: 99.9
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 62.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 93.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 146.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 25.3
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 24.5
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 15.9
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 43.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 21.8
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 70.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 25.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 69
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 68.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

36.5

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 18.8
Samples: 149

Max RPKM: 37.6
Min RPKM: 6.1
Std RPKM: 5.8
Median RPKM: 18.4
GTEX-13PL7-2426-SM-5J2N3 60-69 years, female 37.6
GTEX-1399U-2226-SM-5KLZI 50-59 years, female 37.4
GTEX-Y3I4-1126-SM-4TT7Y 50-59 years, male 34.2
GTEX-V955-1726-SM-4JBHF 60-69 years, male 32.1
GTEX-ZPCL-1626-SM-57WGC 60-69 years, female 31.8
GTEX-ZF28-2526-SM-57WFH 60-69 years, male 31.7
GTEX-14A5I-2426-SM-5Q5CP 50-59 years, female 31.0
GTEX-ZLFU-1426-SM-4WWEU 40-49 years, male 30.3
GTEX-X15G-1526-SM-4PQZM 50-59 years, female 29.6
GTEX-139TS-2226-SM-5J2N1 60-69 years, male 27.2
Show all
Colon - Transverse
RPKM: 50.0
Samples: 196

Max RPKM: 151.6
Min RPKM: 7.9
Std RPKM: 26.8
Median RPKM: 53.1
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 151.6
GTEX-14E6E-1526-SM-5RQIG 30-39 years, male 122.7
GTEX-UJHI-1126-SM-4IHLN 50-59 years, female 105.3
GTEX-XUJ4-2026-SM-4BOOW 60-69 years, female 102.0
GTEX-R55D-1826-SM-48FEF 50-59 years, male 101.0
GTEX-WOFM-2026-SM-4OOSQ 20-29 years, male 96.9
GTEX-T5JW-1126-SM-4DM5V 20-29 years, female 95.0
GTEX-1122O-1526-SM-5N9CL 60-69 years, female 94.5
GTEX-R55G-1226-SM-48FDC 40-49 years, female 93.6
GTEX-U3ZN-2126-SM-4DXU1 30-39 years, female 92.2
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

128.6

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 128.6
FF:10014-101C5 62,83,84 years, mixed 128.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.