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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:146.0TPM
GTEx:61.4RPKM
FANTOM5:72.4Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:High
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA003044

  

Antibody HPA003643

  

Antibody CAB009546

  

Endothelial cells

 Not detected   Not detected   Medium  

Glandular cells

 High   High   High  

Peripheral nerve/ganglion

 Not detected   Not detected   Medium  
     
     

COLON - HPA RNA-seq

Average TPM

146.0
overview Male, age 54 Sample 1
TPM: 143
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 129.7
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 188.4
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 269.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 66.6
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 100.2
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 112.8
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 156.8
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 88.1
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 182.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 128.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 185.6
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 147.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

61.4

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 8.8
Samples: 149

Max RPKM: 35.1
Min RPKM: 3.3
Std RPKM: 4.5
Median RPKM: 7.9
GTEX-Y5LM-1426-SM-5RQJL 40-49 years, female 35.1
GTEX-XBED-1726-SM-47JYO 60-69 years, male 33.7
GTEX-V955-1726-SM-4JBHF 60-69 years, male 21.7
GTEX-WQUQ-2626-SM-4MVNP 60-69 years, male 21.7
GTEX-ZPCL-1626-SM-57WGC 60-69 years, female 20.7
GTEX-11EQ9-1526-SM-5PNY7 30-39 years, male 20.3
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 19.1
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 17.1
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 16.4
GTEX-XUJ4-2126-SM-4BOOX 60-69 years, female 15.5
Show all
Colon - Transverse
RPKM: 101.3
Samples: 196

Max RPKM: 423.6
Min RPKM: 3.6
Std RPKM: 78.2
Median RPKM: 101.9
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 423.6
GTEX-XUJ4-2026-SM-4BOOW 60-69 years, female 280.6
GTEX-Y3IK-1826-SM-4WWDS 50-59 years, female 254.1
GTEX-T5JW-1126-SM-4DM5V 20-29 years, female 252.1
GTEX-UJHI-1126-SM-4IHLN 50-59 years, female 250.3
GTEX-Y5LM-1526-SM-4VDTA 40-49 years, female 249.4
GTEX-ZYWO-1626-SM-5E44H 40-49 years, female 243.0
GTEX-111CU-1426-SM-5GZYP 50-59 years, male 235.3
GTEX-131XG-1826-SM-5LZV4 50-59 years, female 234.3
GTEX-13111-0726-SM-5DUVE 50-59 years, male 232.6
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

72.4

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 72.4
FF:10014-101C5 62,83,84 years, mixed 72.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.