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COLON - Expression summary

RNA expression
HPA:2.2TPM
GTEx:0.7RPKM
FANTOM5:11.3Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

2.2
overview Male, age 54 Sample 1
TPM: 1.4
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 0.3
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 0.8
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 2.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 0.7
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 3.6
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 1.8
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 0.7
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 5.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 2.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 1.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 4.7
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 2.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

0.7

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 0.8
Samples: 149

Max RPKM: 3.0
Min RPKM: 0.0
Std RPKM: 0.6
Median RPKM: 0.5
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 3.0
GTEX-145LS-2926-SM-5O99G 60-69 years, female 2.9
GTEX-11DXZ-1626-SM-5GIDI 50-59 years, male 2.7
GTEX-11PRG-2026-SM-5GU5F 50-59 years, male 2.3
GTEX-ZC5H-2426-SM-4WAZ6 40-49 years, female 2.3
GTEX-ZE7O-2626-SM-51MSS 50-59 years, female 2.2
GTEX-ZVZQ-2626-SM-59HLB 60-69 years, female 2.2
GTEX-1212Z-1826-SM-5FQSH 60-69 years, male 2.1
GTEX-147JS-2626-SM-5S2UX 60-69 years, male 2.1
GTEX-131YS-2926-SM-5EGKI 60-69 years, female 1.9
Show all
Colon - Transverse
RPKM: 0.6
Samples: 196

Max RPKM: 4.1
Min RPKM: 0.0
Std RPKM: 0.6
Median RPKM: 0.4
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 4.1
GTEX-12ZZZ-2426-SM-5GCNN 60-69 years, male 3.8
GTEX-Z93S-2426-SM-5HL8N 50-59 years, male 3.4
GTEX-111VG-2226-SM-5N9DU 60-69 years, male 2.9
GTEX-145LS-2726-SM-5Q5D8 60-69 years, female 2.9
GTEX-14AS3-1126-SM-5Q5CR 40-49 years, female 2.7
GTEX-11ONC-2026-SM-5HL61 60-69 years, male 2.2
GTEX-12KS4-2426-SM-5LU8P 30-39 years, male 2.0
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 2.0
GTEX-13FHP-2426-SM-5KLZ5 50-59 years, male 1.8
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

11.3

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 11.3
FF:10014-101C5 62,83,84 years, mixed 11.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.