Fields »
ABOUT
HELP
BLOG
PSMA1

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:67.9TPM
GTEx:11.1RPKM
FANTOM5:121.7Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:High
Peripheral nerve/ganglion:Medium
 
 

Antibody staining

Antibody HPA037646

  

Antibody HPA043891

  

Antibody CAB033765

  

Endothelial cells

 Medium   Low   Medium  

Glandular cells

 High   High   Medium  

Peripheral nerve/ganglion

 Medium  
        
     
     
     

COLON - HPA RNA-seq

Average TPM

67.9
overview Male, age 54 Sample 1
TPM: 66.1
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 52.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 48.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 58.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 47.2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 83.4
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 95.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 66.9
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 75.9
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 85
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 82.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 74.2
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 45.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

11.1

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 11.2
Samples: 149

Max RPKM: 17.0
Min RPKM: 3.9
Std RPKM: 2.2
Median RPKM: 10.9
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 17.0
GTEX-11I78-1326-SM-5PNY9 50-59 years, female 16.2
GTEX-13OVI-2126-SM-5KM3U 60-69 years, female 16.2
GTEX-1399U-2226-SM-5KLZI 50-59 years, female 16.1
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 15.5
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 15.1
GTEX-ZLFU-1426-SM-4WWEU 40-49 years, male 15.1
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 15.0
GTEX-12WSG-2426-SM-5EQLZ 50-59 years, female 14.7
GTEX-1339X-1726-SM-5P9J9 40-49 years, male 14.7
Show all
Colon - Transverse
RPKM: 11.1
Samples: 196

Max RPKM: 22.0
Min RPKM: 7.2
Std RPKM: 1.8
Median RPKM: 10.9
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 22.0
GTEX-O5YT-1426-SM-3MJHC 20-29 years, male 16.9
GTEX-QDVN-1326-SM-48TZ3 50-59 years, male 16.0
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 15.0
GTEX-PWOO-1326-SM-48TCJ 40-49 years, female 14.8
GTEX-QDVJ-1326-SM-48U1X 50-59 years, male 14.3
GTEX-U4B1-1126-SM-4DXV3 40-49 years, male 14.3
GTEX-XMK1-1726-SM-4B64Z 40-49 years, male 14.1
GTEX-13VXT-2426-SM-5LU46 20-29 years, female 14.0
GTEX-ZV6S-1226-SM-59HLH 40-49 years, female 13.9
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

121.7

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 121.7
FF:10014-101C5 62,83,84 years, mixed 121.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.