Fields »
ABOUT
HELP
BLOG
PLD2

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:9.1TPM
GTEx:8.8RPKM
FANTOM5:8.3Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:High
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA013397

  

Endothelial cells

 Low  

Glandular cells

 High  

Peripheral nerve/ganglion

 Medium  
 
 
 

COLON - HPA RNA-seq

Average TPM

9.1
overview Male, age 54 Sample 1
TPM: 7.9
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 12.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 12.3
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 8.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 10.1
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 10
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 7.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 7.7
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 7.9
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 6.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 8.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 8.9
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 9
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

8.8

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 9.1
Samples: 149

Max RPKM: 16.4
Min RPKM: 3.9
Std RPKM: 2.7
Median RPKM: 8.6
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 16.4
GTEX-13FHO-2726-SM-5K7VG 60-69 years, male 16.3
GTEX-145LS-2926-SM-5O99G 60-69 years, female 15.1
GTEX-147GR-2826-SM-5RQK8 60-69 years, male 15.1
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 14.9
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 14.8
GTEX-139TS-2226-SM-5J2N1 60-69 years, male 14.3
GTEX-YECK-2826-SM-5IFHF 60-69 years, male 14.1
GTEX-WI4N-2226-SM-4OOS9 40-49 years, female 13.9
GTEX-11DXY-2026-SM-5N9CZ 60-69 years, male 13.8
Show all
Colon - Transverse
RPKM: 8.6
Samples: 196

Max RPKM: 19.2
Min RPKM: 4.9
Std RPKM: 1.9
Median RPKM: 8.5
GTEX-UPIC-1726-SM-4IHKG 20-29 years, female 19.2
GTEX-13OVI-2026-SM-5J1MU 60-69 years, female 16.4
GTEX-147JS-2526-SM-5S2Q8 60-69 years, male 13.5
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 12.9
GTEX-ZAB4-2226-SM-5HL97 40-49 years, male 12.9
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 12.7
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 12.5
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 12.4
GTEX-11O72-2226-SM-5PNW2 40-49 years, male 11.8
GTEX-13FHP-2426-SM-5KLZ5 50-59 years, male 11.8
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

8.3

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 8.3
FF:10014-101C5 62,83,84 years, mixed 8.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.