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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:124.7TPM
GTEx:63.0RPKM
FANTOM5:196.5Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:High
Peripheral nerve/ganglion:Medium
 
 
 

Antibody staining

Antibody HPA041940

  

Antibody HPA043560

  

Antibody CAB004465

  

Endothelial cells

 Medium   Medium  

Glandular cells

 High   Medium   High  

Peripheral nerve/ganglion

 High   Medium  
        
        
     
     
     

COLON - HPA RNA-seq

Average TPM

124.7
overview Male, age 54 Sample 1
TPM: 125.4
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 152.7
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 168.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 120.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 116.6
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 84.3
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 116.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 111.1
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 118.8
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 129.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 161.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 117.4
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 98.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

63.0

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 54.8
Samples: 149

Max RPKM: 83.1
Min RPKM: 34.2
Std RPKM: 9.9
Median RPKM: 53.6
GTEX-11P81-1426-SM-5P9JN 30-39 years, female 83.1
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 81.3
GTEX-13FHO-2726-SM-5K7VG 60-69 years, male 81.2
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 78.8
GTEX-139TS-2226-SM-5J2N1 60-69 years, male 77.2
GTEX-ZAB4-2426-SM-5HL8A 40-49 years, male 76.5
GTEX-145LS-2926-SM-5O99G 60-69 years, female 75.8
GTEX-1477Z-2126-SM-5Q5CM 60-69 years, male 74.9
GTEX-13OVJ-1826-SM-5KM2D 50-59 years, female 74.1
GTEX-13OW8-2726-SM-5L3FZ 60-69 years, male 73.9
Show all
Colon - Transverse
RPKM: 69.1
Samples: 196

Max RPKM: 102.6
Min RPKM: 37.2
Std RPKM: 14.4
Median RPKM: 69.7
GTEX-Q734-1126-SM-48TZY 40-49 years, female 102.6
GTEX-WOFM-2026-SM-4OOSQ 20-29 years, male 102.4
GTEX-XUJ4-2026-SM-4BOOW 60-69 years, female 100.3
GTEX-WFON-1426-SM-4LVMT 40-49 years, male 100.0
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 96.7
GTEX-14DAR-1526-SM-5RQIX 50-59 years, male 95.6
GTEX-11DXX-1826-SM-5H126 60-69 years, female 93.3
GTEX-139TS-1926-SM-5IJFO 60-69 years, male 92.6
GTEX-145LT-0926-SM-5LU9C 40-49 years, male 92.3
GTEX-UJHI-1126-SM-4IHLN 50-59 years, female 91.4
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

196.5

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 196.5
FF:10014-101C5 62,83,84 years, mixed 196.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.