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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:19.3TPM
GTEx:21.5RPKM
FANTOM5:32.4Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Low
Peripheral nerve/ganglion:High
 

Antibody staining

Antibody HPA026678

  

Antibody CAB004399

  

Endothelial cells

 Medium   Low  

Glandular cells

 Low   Medium  

Peripheral nerve/ganglion

 High   Low  
   
   
   

COLON - HPA RNA-seq

Average TPM

19.3
overview Male, age 54 Sample 1
TPM: 20.9
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 17.4
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 14.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 15
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 15.2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 28.5
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 13.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 15.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 30.8
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 14.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 21.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 24.2
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 19.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

21.5

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 30.1
Samples: 149

Max RPKM: 67.8
Min RPKM: 12.3
Std RPKM: 10.4
Median RPKM: 28.0
GTEX-ZXES-1726-SM-5E43G 30-39 years, female 67.8
GTEX-11I78-1326-SM-5PNY9 50-59 years, female 61.9
GTEX-12BJ1-2026-SM-5FQUH 60-69 years, male 53.2
GTEX-139UW-2326-SM-5KM1Y 60-69 years, male 50.1
GTEX-ZTSS-1226-SM-51MSZ 40-49 years, male 49.9
GTEX-14E6E-1726-SM-5S2R6 30-39 years, male 49.4
GTEX-111YS-1826-SM-5GIEP 60-69 years, male 47.8
GTEX-ZPIC-2626-SM-57WE2 40-49 years, female 47.1
GTEX-WFG7-1626-SM-4LVMF 20-29 years, male 47.0
GTEX-13PVR-1726-SM-5Q5EC 60-69 years, female 46.7
Show all
Colon - Transverse
RPKM: 15.1
Samples: 196

Max RPKM: 52.9
Min RPKM: 2.6
Std RPKM: 11.1
Median RPKM: 10.4
GTEX-WEY5-1426-SM-4LMJ3 40-49 years, female 52.9
GTEX-13CF3-1426-SM-5K7YY 60-69 years, female 47.6
GTEX-ZV6S-1226-SM-59HLH 40-49 years, female 46.4
GTEX-14AS3-1126-SM-5Q5CR 40-49 years, female 45.3
GTEX-RWS6-1826-SM-47JXX 60-69 years, female 42.9
GTEX-Z93S-2426-SM-5HL8N 50-59 years, male 41.3
GTEX-13O61-1626-SM-5KM3T 60-69 years, male 38.2
GTEX-13FH7-1526-SM-5J2N6 50-59 years, female 38.1
GTEX-XXEK-1926-SM-4BRVD 50-59 years, male 37.6
GTEX-14ICL-1226-SM-5S2RD 30-39 years, male 37.2
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

32.4

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 32.4
FF:10014-101C5 62,83,84 years, mixed 32.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.