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TISSUE ATLAS PRIMARY DATA CEREBRAL CORTEX

GENE/PROTEIN

Antibody validation


Dictionary

Cerebral cortex

Tissue proteome

Brain
Extended brain samples

CEREBRAL CORTEX - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:53.3TPM
GTEx:37.7RPKM

CEREBRAL CORTEX - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glial cells:Low
Neuronal cells:Low
Neuropil:Medium
 

Antibody staining

Antibody HPA038135

 

Antibody HPA038136

 

Antibody CAB017187

 

Endothelial cells

Medium   Medium   Medium  

Glial cells

Low   Low   Medium  

Neuronal cells

Not detected   Not detected   High  

Neuropil

Medium   Low   Medium  
     
     
     

CEREBRAL CORTEX - HPA RNA-seq

Average TPM

53.3

N/A Male, age 5 Sample 1
TPM: 32.4
overview Female, age 40 Sample 2
TPM: 88.1
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65
overview Male, age 70 Sample 3
TPM: 39.3
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65

CEREBRAL CORTEX - GTEx RNA-seq

Average RPKM

37.7

GTEx sample id

Sample description

RPKM

Brain - Cortex
RPKM: 43.0
Samples: 114

Max RPKM: 146.8
Min RPKM: 17.4
Std RPKM: 17.7
Median RPKM: 38.1
GTEX-13G51-3026-SM-5IJB8 60-69 years, male 146.8
GTEX-N7MT-1126-SM-5SI7V 60-69 years, female 95.1
GTEX-12ZZY-3026-SM-5GCOU 60-69 years, male 83.7
GTEX-11GS4-3126-SM-5A5LH 60-69 years, male 78.4
GTEX-13OW8-2826-SM-5L3GC 60-69 years, male 75.3
GTEX-1192X-3126-SM-5N9BY 50-59 years, male 74.8
GTEX-QVUS-2826-SM-3GADB 60-69 years, female 73.3
GTEX-12WSA-2926-SM-5EQ4D 60-69 years, male 71.0
GTEX-1445S-3026-SM-5O9BR 60-69 years, male 70.9
GTEX-13OVJ-2826-SM-5L3GW 50-59 years, female 67.9
GTEX-1117F-3226-SM-5N9CT 60-69 years, female 67.5
GTEX-111FC-3126-SM-5GZZ2 60-69 years, male 67.3
GTEX-ZAJG-3126-SM-5HL9J 50-59 years, female 65.4
GTEX-13FHO-3026-SM-5J1O9 60-69 years, male 63.4
GTEX-13FHP-3026-SM-5IJBS 50-59 years, male 63.1
GTEX-13S7M-3126-SM-5RQJQ 60-69 years, female 62.9
GTEX-11ONC-2926-SM-5P9JM 60-69 years, male 61.5
GTEX-12WSD-3126-SM-5HL7P 60-69 years, female 58.9
GTEX-NPJ8-1526-SM-2D7VU 40-49 years, male 55.0
GTEX-XLM4-3026-SM-4AT6L 60-69 years, male 54.9
GTEX-13OVH-3026-SM-5MR4N 70-79 years, male 54.3
GTEX-13JUV-2926-SM-5LZX7 40-49 years, female 53.9
GTEX-13JVG-3126-SM-5L3FH 60-69 years, male 53.1
GTEX-11GSP-3226-SM-5986O 60-69 years, female 52.5
GTEX-139T8-1026-SM-5J2MC 60-69 years, male 51.0
GTEX-13PVQ-3026-SM-5SI93 50-59 years, male 51.0
GTEX-13NYB-3026-SM-5IJD7 40-49 years, male 50.7
GTEX-13OW7-3026-SM-5L3GY 50-59 years, male 50.4
GTEX-13IVO-2926-SM-5L3CZ 70-79 years, male 50.3
GTEX-11GSO-2926-SM-5HL73 60-69 years, male 49.5
GTEX-11EMC-3226-SM-5EGKW 60-69 years, female 49.1
GTEX-QDT8-2926-SM-32PKC 30-39 years, female 47.5
GTEX-13X6K-2926-SM-5Q5D5 60-69 years, female 47.1
GTEX-XOTO-3026-SM-4B65M 50-59 years, male 46.9
GTEX-Y111-2726-SM-4TT3N 50-59 years, male 46.6
GTEX-Q2AG-2926-SM-2HMJ3 40-49 years, female 46.0
GTEX-12ZZW-2926-SM-5LZUP 50-59 years, male 45.9
GTEX-13OW6-3026-SM-5J2MI 50-59 years, male 45.6
GTEX-13FLW-1426-SM-5K7YE 50-59 years, male 45.5
GTEX-147GR-3026-SM-5S2ML 60-69 years, male 45.5
GTEX-1313W-3126-SM-5LZUI 50-59 years, female 44.0
GTEX-13QIC-2926-SM-5J2NF 60-69 years, female 43.6
GTEX-1128S-2726-SM-5H12C 60-69 years, female 43.1
GTEX-1399T-3026-SM-5KLZC 60-69 years, male 43.0
GTEX-YFC4-3126-SM-5PNV6 40-49 years, female 42.7
GTEX-QMR6-1426-SM-32PLA 50-59 years, male 42.1
GTEX-145LS-3126-SM-5Q5BY 60-69 years, female 42.0
GTEX-T6MN-2626-SM-32PMQ 50-59 years, male 42.0
GTEX-WHSE-3026-SM-3P5ZH 20-29 years, male 42.0
GTEX-ZVT3-3026-SM-5E43N 60-69 years, female 41.7
GTEX-14A5I-2926-SM-5Q5CQ 50-59 years, female 40.9
GTEX-12ZZZ-3026-SM-5BC67 60-69 years, male 40.6
GTEX-WL46-2926-SM-3LK82 50-59 years, male 40.5
GTEX-145MG-3026-SM-5RQJA 50-59 years, male 39.6
GTEX-145MF-2726-SM-5O995 50-59 years, male 39.5
GTEX-11TTK-2926-SM-5PNYP 60-69 years, female 39.3
GTEX-144FL-3026-SM-5O99C 50-59 years, male 38.8
GTEX-13O3O-3126-SM-5KM3H 60-69 years, female 37.5
GTEX-11EI6-3026-SM-5GZZO 60-69 years, male 37.1
GTEX-UTHO-3026-SM-3GAFB 60-69 years, male 37.0
GTEX-ZZPT-3026-SM-5GZXH 50-59 years, male 36.8
GTEX-14ASI-3026-SM-5S2PN 60-69 years, male 36.7
GTEX-QVJO-1426-SM-2S1QY 60-69 years, female 36.6
GTEX-14BMV-3026-SM-5S2PQ 50-59 years, male 36.5
GTEX-X4XX-3026-SM-3NMB2 60-69 years, male 36.4
GTEX-131XW-3126-SM-5LZUC 50-59 years, female 36.2
GTEX-ZAK1-3026-SM-5S2MJ 50-59 years, female 35.8
GTEX-13PL6-3126-SM-5LUAR 40-49 years, female 35.4
GTEX-ZE7O-3126-SM-5HL5X 50-59 years, female 34.9
GTEX-T5JC-2426-SM-3NMDB 20-29 years, male 34.3
GTEX-144GL-3026-SM-5Q5CW 50-59 years, male 34.1
GTEX-Y8DK-0826-SM-4TT3T 60-69 years, male 34.1
GTEX-11DXY-3226-SM-5GIDE 60-69 years, male 34.0
GTEX-13SLX-3126-SM-5S2Q5 50-59 years, female 34.0
GTEX-11WQK-3026-SM-5EQL6 50-59 years, male 33.9
GTEX-117XS-3026-SM-5N9CA 60-69 years, male 33.8
GTEX-13VXU-2926-SM-5LU5C 50-59 years, male 33.5
GTEX-R55F-1326-SM-5S2V4 50-59 years, male 33.1
GTEX-11DXW-1126-SM-5H12Q 40-49 years, male 33.0
GTEX-12ZZX-2926-SM-5GCOQ 40-49 years, female 33.0
GTEX-13O3Q-2926-SM-5KM45 50-59 years, male 32.7
GTEX-TSE9-3026-SM-3DB76 60-69 years, female 32.7
GTEX-12WSH-3026-SM-5CVNI 50-59 years, male 32.3
GTEX-11OC5-0726-SM-5P9JK 60-69 years, male 32.1
GTEX-RNOR-2326-SM-2TF4I 50-59 years, female 32.0
GTEX-YJ89-3026-SM-5IFJI 60-69 years, male 31.6
GTEX-ZYFD-3026-SM-5E44C 50-59 years, male 31.5
GTEX-131YS-3126-SM-5KLYT 60-69 years, female 30.9
GTEX-13FXS-3126-SM-5J2NN 50-59 years, male 30.7
GTEX-145MH-3026-SM-5Q5DZ 50-59 years, male 30.3
GTEX-PWO3-0926-SM-2I5EY 60-69 years, female 30.2
GTEX-X585-3026-SM-46MWF 50-59 years, male 30.1
GTEX-11NUK-2926-SM-5A5MD 50-59 years, male 29.8
GTEX-RU72-3026-SM-5SI7Y 50-59 years, female 29.5
GTEX-NPJ7-2726-SM-2I3FT 60-69 years, female 29.4
GTEX-12WSC-3026-SM-5GCNF 50-59 years, male 29.2
GTEX-ZUA1-3026-SM-59HJC 40-49 years, male 29.1
GTEX-11ZUS-2926-SM-5FQSL 30-39 years, male 29.0
GTEX-WVLH-3026-SM-3MJG9 50-59 years, male 28.5
GTEX-11O72-2926-SM-5BC4V 40-49 years, male 28.4
GTEX-132Q8-3026-SM-5PNVG 60-69 years, male 27.8
GTEX-WZTO-2926-SM-3NM9I 40-49 years, male 27.5
GTEX-11PRG-2926-SM-5987A 50-59 years, male 27.4
GTEX-12126-1026-SM-5P9JJ 20-29 years, male 27.3
GTEX-13NYS-3126-SM-5KLYV 60-69 years, male 27.1
GTEX-13X6J-3026-SM-5Q5CU 50-59 years, male 27.0
GTEX-11NV4-2126-SM-5N9DS 60-69 years, male 26.8
GTEX-WWYW-3126-SM-3NB39 50-59 years, female 25.7
GTEX-OXRN-2426-SM-2I5EQ 50-59 years, male 23.4
GTEX-T2IS-3026-SM-32QPM 20-29 years, female 23.1
GTEX-Z93S-2926-SM-57WB9 50-59 years, male 22.8
GTEX-11OF3-2926-SM-5HL78 60-69 years, male 22.4
GTEX-13NYC-2826-SM-5K7WR 60-69 years, male 19.0
GTEX-PVOW-2526-SM-2XCF7 40-49 years, male 17.4
Show all
Brain - Frontal Cortex (BA9)
RPKM: 32.0
Samples: 108

Max RPKM: 78.7
Min RPKM: 12.3
Std RPKM: 12.7
Median RPKM: 29.4
GTEX-ZE7O-0011-R10a-SM-57WAZ 50-59 years, female 78.7
GTEX-13JVG-0011-R10b-SM-5KM2P 60-69 years, male 68.3
GTEX-XMD1-0011-R10A-SM-4AT4A 60-69 years, male 66.6
GTEX-12WSA-0011-R10b-SM-5P9ET 60-69 years, male 63.0
GTEX-ZDXO-0011-R10a-SM-4WWD8 60-69 years, male 57.2
GTEX-11GSP-0011-R10a-SM-5NQ7J 60-69 years, female 56.7
GTEX-13SLW-0011-R10a-SM-5S2UI 70-79 years, male 55.8
GTEX-13OVJ-0011-R10b-SM-5L3HT 50-59 years, female 55.1
GTEX-13CZV-0011-R10b-SM-5LZYD 60-69 years, male 54.4
GTEX-13FLV-0011-R10b-SM-5LZZ2 50-59 years, male 53.4
GTEX-1445S-0011-R10a-SM-5PNWB 60-69 years, male 53.2
GTEX-RVPU-0011-R10A-SM-2XCAH 50-59 years, male 52.1
GTEX-1477Z-0011-R10b-SM-5S2RF 60-69 years, male 50.9
GTEX-ZAB4-0011-R10a-SM-4SOKH 40-49 years, male 48.8
GTEX-13FLW-0011-R10b-SM-5LZZF 50-59 years, male 48.4
GTEX-13OW8-0011-R10a-SM-5L3H6 60-69 years, male 48.3
GTEX-13JUV-0011-R10b-SM-5LZXR 40-49 years, female 48.0
GTEX-XLM4-0011-R10A-SM-4AT5P 60-69 years, male 44.3
GTEX-13OVL-0011-R10a-SM-5L3GS 50-59 years, male 43.4
GTEX-11WQC-0011-R10a-SM-57WCT 60-69 years, male 43.1
GTEX-14BIL-0011-R10a-SM-5SI75 50-59 years, male 41.7
GTEX-N7MT-0011-R10A-SM-2I3E1 60-69 years, female 38.9
GTEX-13X6K-0011-R10a-SM-5P9JR 60-69 years, female 38.6
GTEX-13O3O-0011-R10a-SM-5LUA9 60-69 years, female 37.4
GTEX-TSE9-0011-R10A-SM-3DB7O 60-69 years, female 37.1
GTEX-13N1W-0011-R10b-SM-5MR4H 70-79 years, male 36.5
GTEX-13RTJ-0011-R10b-SM-5O9CW 60-69 years, male 36.4
GTEX-13QJC-0011-R10a-SM-5SI63 60-69 years, female 36.1
GTEX-13OW6-0011-R10a-SM-5L3HE 50-59 years, male 35.0
GTEX-ZV68-0011-R10a-SM-51MT7 50-59 years, female 34.1
GTEX-14753-0011-R10b-SM-5S2WE 60-69 years, male 34.0
GTEX-YFC4-0011-R10a-SM-4SOK5 40-49 years, female 33.9
GTEX-13FTZ-0011-R10b-SM-5KLZS 60-69 years, male 33.2
GTEX-13S7M-0011-R10b-SM-5PNZB 60-69 years, female 33.1
GTEX-X261-0011-R10B-SM-4E3JT 50-59 years, male 32.9
GTEX-13FHO-0011-R10b-SM-5J2MM 60-69 years, male 32.6
GTEX-WWYW-0011-R10A-SM-3NB35 50-59 years, female 32.6
GTEX-12WSD-0011-R10b-SM-5GU79 60-69 years, female 32.5
GTEX-12WSM-0011-R10a-SM-5DUWV 60-69 years, male 32.1
GTEX-13FXS-0011-R10a-SM-5J2MA 50-59 years, male 32.0
GTEX-131XH-0011-R10a-SM-5EGLJ 50-59 years, male 31.8
GTEX-13QIC-0011-R10a-SM-5O9C7 60-69 years, female 31.8
GTEX-13G51-0011-R10b-SM-5LZYF 60-69 years, male 31.6
GTEX-13OW7-0011-R10a-SM-5L3H3 50-59 years, male 31.4
GTEX-131XW-0011-R10a-SM-5DUVA 50-59 years, female 31.3
GTEX-13X6I-0011-R10a-SM-5PNWI 60-69 years, male 31.1
GTEX-ZF28-0011-R10a-SM-4WWEH 60-69 years, male 31.1
GTEX-12WSF-0011-R10a-SM-5LZVH 70-79 years, male 30.9
GTEX-147F4-0011-R10b-SM-5S2WC 50-59 years, male 30.3
GTEX-12ZZW-0011-R10b-SM-5HL9X 50-59 years, male 29.9
GTEX-12WSH-0011-R10a-SM-5LZUS 50-59 years, male 29.7
GTEX-145LU-0011-R10a-SM-5PNWJ 50-59 years, male 29.7
GTEX-13IVO-0011-R10a-SM-5LZY3 70-79 years, male 29.4
GTEX-S7SE-0011-R10A-SM-2XCDF 50-59 years, male 29.4
GTEX-T5JC-0011-R10A-SM-32PM2 20-29 years, male 29.4
GTEX-QVJO-0011-R10A-SM-2S1QJ 60-69 years, female 29.0
GTEX-131YS-0011-R10b-SM-5EQ5N 60-69 years, female 28.5
GTEX-Q2AG-0011-R10A-SM-2HMLA 40-49 years, female 28.4
GTEX-QMR6-0011-R10A-SM-32PKO 50-59 years, male 28.2
GTEX-X4XX-0011-R10B-SM-46MWO 60-69 years, male 28.2
GTEX-145MH-0011-R10b-SM-5PNUK 50-59 years, male 27.9
GTEX-145LS-0011-R10a-SM-5PNUQ 60-69 years, female 27.8
GTEX-WVLH-0011-R10A-SM-3MJFM 50-59 years, male 27.8
GTEX-ZVT3-0011-R10b-SM-57WB6 60-69 years, female 27.8
GTEX-11H98-0011-R10b-SM-5NQ98 50-59 years, male 27.7
GTEX-147GR-0011-R10b-SM-5S2UM 60-69 years, male 27.7
GTEX-14ASI-0011-R10b-SM-5S2VZ 60-69 years, male 27.7
GTEX-ZVZQ-0011-R10b-SM-51MRT 60-69 years, female 27.7
GTEX-NPJ8-0011-R10A-SM-2YUMO 40-49 years, male 27.6
GTEX-ZXG5-0011-R10a-SM-57WDD 60-69 years, male 27.1
GTEX-ZUA1-0011-R10a-SM-51MT6 40-49 years, male 26.8
GTEX-132Q8-0011-R10b-SM-5DUWZ 60-69 years, male 25.8
GTEX-13O3Q-0011-R10b-SM-5KM39 50-59 years, male 25.2
GTEX-13NYB-0011-R10a-SM-5KM43 40-49 years, male 24.6
GTEX-QDT8-0011-R10A-SM-32PKG 30-39 years, female 24.6
GTEX-12ZZZ-0011-R10a-SM-5P9HC 60-69 years, male 24.5
GTEX-YJ89-0011-R10a-SM-4SOK9 60-69 years, male 24.3
GTEX-Z93S-0011-R10a-SM-4RGNM 50-59 years, male 24.1
GTEX-13NZA-0011-R10b-SM-5KM54 60-69 years, male 24.0
GTEX-12ZZX-0011-R10b-SM-5DUWK 40-49 years, female 23.6
GTEX-QVUS-0011-R10A-SM-3GIK3 60-69 years, female 23.4
GTEX-WZTO-0011-R10B-SM-4E3KB 40-49 years, male 23.3
GTEX-Y8DK-0011-R10A-SM-4SOK1 60-69 years, male 23.1
GTEX-13SLX-0011-R10a-SM-5P9HV 50-59 years, female 22.3
GTEX-145MG-0011-R10a-SM-5PNWG 50-59 years, male 21.4
GTEX-OXRN-0011-R10A-SM-2I5GC 50-59 years, male 21.3
GTEX-X585-0011-R10A-SM-46MUY 50-59 years, male 21.3
GTEX-12WSC-0011-R10a-SM-5GU57 50-59 years, male 21.0
GTEX-P44H-0011-R10A-SM-2XCEK 40-49 years, male 21.0
GTEX-12ZZY-0011-R10b-SM-5HL7W 60-69 years, male 20.5
GTEX-14BIN-0011-R10a-SM-5S2UA 50-59 years, female 20.5
GTEX-13N2G-0011-R10a-SM-5MR34 60-69 years, male 20.4
GTEX-13NYS-0011-R10a-SM-5MR4S 60-69 years, male 20.3
GTEX-NL4W-0011-R10A-SM-2I3DY 50-59 years, male 20.2
GTEX-12126-0011-R10b-SM-5BC6T 20-29 years, male 20.1
GTEX-T6MN-0011-R10A-SM-32QP7 50-59 years, male 19.8
GTEX-11ZUS-0011-R10b-SM-5BC79 30-39 years, male 19.3
GTEX-X4EP-0011-R10B-SM-4QASJ 60-69 years, female 18.6
GTEX-N7MS-0011-R10A-SM-2HMJK 60-69 years, male 18.0
GTEX-NPJ7-0011-R10A-SM-2I3E5 60-69 years, female 17.9
GTEX-OXRO-0011-R10A-SM-2I5EH 60-69 years, female 17.1
GTEX-12WSE-0011-R10b-SM-5P9JV 20-29 years, male 16.6
GTEX-1313W-0011-R10b-SM-5DUXA 50-59 years, female 16.4
GTEX-139TS-0011-R10a-SM-5K7TU 60-69 years, male 16.4
GTEX-NL3H-0011-R10A-SM-2I3E9 60-69 years, male 15.6
GTEX-13X6J-0011-R10b-SM-5PNWA 50-59 years, male 14.9
GTEX-WL46-0011-R10A-SM-3MJFQ 50-59 years, male 14.4
GTEX-11WQK-0011-R10a-SM-5BC6R 50-59 years, male 12.3
Show all

CEREBRAL CORTEX - FANTOM5 CAGE

No Fantom CAGE analysis found for this gene / tissue

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