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COLON - Expression summary

RNA expression
HPA:20.5TPM
GTEx:12.8RPKM
FANTOM5:100.3Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

20.5
overview Male, age 54 Sample 1
TPM: 16.8
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 15.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 16.7
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 34
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 12.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 25.4
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 17.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 21.7
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 18.7
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 22.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 22.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 23.7
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 18.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

12.8

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 13.3
Samples: 149

Max RPKM: 37.3
Min RPKM: 5.5
Std RPKM: 4.7
Median RPKM: 12.2
GTEX-11TUW-2326-SM-5EQMO 60-69 years, male 37.3
GTEX-WI4N-2226-SM-4OOS9 40-49 years, female 29.7
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 29.5
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 28.7
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 24.5
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 23.0
GTEX-12WSG-2426-SM-5EQLZ 50-59 years, female 22.8
GTEX-ZVZQ-2626-SM-59HLB 60-69 years, female 21.8
GTEX-14A5H-1626-SM-5SIAN 60-69 years, male 21.3
GTEX-14C39-1626-SM-5S2P4 40-49 years, male 20.9
Show all
Colon - Transverse
RPKM: 12.4
Samples: 196

Max RPKM: 40.1
Min RPKM: 6.1
Std RPKM: 4.4
Median RPKM: 11.3
GTEX-14C38-2626-SM-5RQI4 50-59 years, male 40.1
GTEX-11TUW-2026-SM-5EQL8 60-69 years, male 35.6
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 29.2
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 25.3
GTEX-11O72-2226-SM-5PNW2 40-49 years, male 24.9
GTEX-11EQ9-1426-SM-5987G 30-39 years, male 24.8
GTEX-111VG-2226-SM-5N9DU 60-69 years, male 23.5
GTEX-148VJ-2626-SM-5QGPI 70-79 years, male 21.8
GTEX-13W3W-2126-SM-5K7UX 60-69 years, female 21.7
GTEX-14ICL-1226-SM-5S2RD 30-39 years, male 21.7
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

100.3

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 100.3
FF:10014-101C5 62,83,84 years, mixed 100.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.