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COLON - Expression summary

RNA expression
HPA:272.4TPM
GTEx:45.3RPKM
FANTOM5:127.9Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

272.4
overview Male, age 54 Sample 1
TPM: 239.4
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 296.2
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 355.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 219.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 371.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 324.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 352.1
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 236.1
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 262.5
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 262.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 234.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 226.1
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 161.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

45.3

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 43.4
Samples: 149

Max RPKM: 101.8
Min RPKM: 25.3
Std RPKM: 11.6
Median RPKM: 41.2
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 101.8
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 91.9
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 82.9
GTEX-11I78-1326-SM-5PNY9 50-59 years, female 68.7
GTEX-XAJ8-0726-SM-47JY5 40-49 years, male 67.7
GTEX-ZTSS-1226-SM-51MSZ 40-49 years, male 67.5
GTEX-11EM3-1626-SM-5N9CO 20-29 years, female 67.3
GTEX-ZTTD-2626-SM-57WEX 50-59 years, male 62.9
GTEX-12WSL-1826-SM-5LZW9 50-59 years, male 60.8
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 59.9
Show all
Colon - Transverse
RPKM: 46.8
Samples: 196

Max RPKM: 104.1
Min RPKM: 20.8
Std RPKM: 13.3
Median RPKM: 44.2
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 104.1
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 89.7
GTEX-QDVN-1326-SM-48TZ3 50-59 years, male 88.6
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 87.3
GTEX-O5YT-1426-SM-3MJHC 20-29 years, male 83.6
GTEX-13W3W-2126-SM-5K7UX 60-69 years, female 82.6
GTEX-QMRM-1226-SM-447C6 50-59 years, male 82.3
GTEX-PWOO-1326-SM-48TCJ 40-49 years, female 81.0
GTEX-XAJ8-0426-SM-47JYJ 40-49 years, male 77.9
GTEX-XV7Q-2126-SM-4BRVX 40-49 years, female 76.8
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

127.9

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 127.9
FF:10014-101C5 62,83,84 years, mixed 127.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.