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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:7111.0TPM
GTEx:365.4RPKM
FANTOM5:4178.5Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:High
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA044132

  

Antibody CAB034436

  

Endothelial cells

 Low   Not detected  

Glandular cells

 Medium   High  

Peripheral nerve/ganglion

 Not detected   Not detected  
   
   
   

COLON - HPA RNA-seq

Average TPM

7111.0
overview Male, age 54 Sample 1
TPM: 6398.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 9162.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 7036.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 1150.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 13649.2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 4186.5
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 3881.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 7034.5
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 8318.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 10271.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 5694.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 8716.1
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 6943
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

365.4

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 18.7
Samples: 149

Max RPKM: 2168.8
Min RPKM: 0.0
Std RPKM: 177.9
Median RPKM: 0.6
GTEX-WQUQ-2626-SM-4MVNP 60-69 years, male 2168.8
GTEX-XBED-1726-SM-47JYO 60-69 years, male 246.1
GTEX-ZAB4-2426-SM-5HL8A 40-49 years, male 50.7
GTEX-11EQ9-1526-SM-5PNY7 30-39 years, male 44.6
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 41.5
GTEX-14C39-1626-SM-5S2P4 40-49 years, male 24.0
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 21.8
GTEX-V955-1726-SM-4JBHF 60-69 years, male 21.7
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 16.6
GTEX-ZC5H-2426-SM-4WAZ6 40-49 years, female 10.0
Show all
Colon - Transverse
RPKM: 629.1
Samples: 196

Max RPKM: 3080.6
Min RPKM: 0.1
Std RPKM: 661.7
Median RPKM: 443.1
GTEX-147JS-2526-SM-5S2Q8 60-69 years, male 3080.6
GTEX-ZVP2-1526-SM-5NQ82 50-59 years, male 2875.2
GTEX-139TS-1926-SM-5IJFO 60-69 years, male 2840.6
GTEX-13OVJ-1726-SM-5IJDZ 50-59 years, female 2558.1
GTEX-133LE-1526-SM-5IFEN 20-29 years, female 2484.1
GTEX-13OW6-2126-SM-5N9GL 50-59 years, male 2360.2
GTEX-XV7Q-2126-SM-4BRVX 40-49 years, female 2352.6
GTEX-WHWD-1226-SM-4OOS1 50-59 years, male 2017.9
GTEX-12KS4-2426-SM-5LU8P 30-39 years, male 1951.6
GTEX-UPIC-1726-SM-4IHKG 20-29 years, female 1864.8
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

4178.5

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 4178.5
FF:10014-101C5 62,83,84 years, mixed 4178.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.