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H3F3B

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:357.0TPM
GTEx:157.9RPKM
FANTOM5:261.6Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:High
Glandular cells:High
Peripheral nerve/ganglion:High
 

Antibody staining

Antibody HPA042570

  

Antibody CAB037166

  

Antibody CAB037187

  

Antibody CAB037221

  

Endothelial cells

 High   Medium   High   High  

Glandular cells

 High   Medium   Medium   High  

Peripheral nerve/ganglion

 High   Medium   High  
       
       
       

COLON - HPA RNA-seq

Average TPM

357.0
overview Male, age 54 Sample 1
TPM: 439.8
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 560.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 500.1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 502.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 533.4
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 295
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 185.1
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 237.8
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 233.6
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 251.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 399.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 282.8
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 220.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

157.9

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 168.8
Samples: 149

Max RPKM: 1071.2
Min RPKM: 56.9
Std RPKM: 117.8
Median RPKM: 132.1
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 1071.2
GTEX-12ZZW-2426-SM-5DUWE 50-59 years, male 599.4
GTEX-ZLV1-1326-SM-4WWER 60-69 years, female 546.0
GTEX-13VXT-2026-SM-5L3EW 20-29 years, female 473.6
GTEX-ZAB4-2426-SM-5HL8A 40-49 years, male 440.3
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 396.9
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 392.7
GTEX-14BMU-1326-SM-5RQIH 20-29 years, female 379.8
GTEX-1339X-1726-SM-5P9J9 40-49 years, male 376.0
GTEX-11EM3-1626-SM-5N9CO 20-29 years, female 351.0
Show all
Colon - Transverse
RPKM: 149.7
Samples: 196

Max RPKM: 1163.5
Min RPKM: 70.3
Std RPKM: 88.9
Median RPKM: 129.4
GTEX-117YW-1826-SM-5PNY5 50-59 years, male 1163.5
GTEX-UPIC-1726-SM-4IHKG 20-29 years, female 364.5
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 348.2
GTEX-WEY5-1426-SM-4LMJ3 40-49 years, female 323.5
GTEX-14C38-2626-SM-5RQI4 50-59 years, male 299.7
GTEX-XYKS-2226-SM-4E3IU 60-69 years, female 286.8
GTEX-Y114-1526-SM-4TT79 50-59 years, female 280.3
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 271.1
GTEX-13W3W-2126-SM-5K7UX 60-69 years, female 269.8
GTEX-O5YT-1426-SM-3MJHC 20-29 years, male 255.7
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

261.6

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 261.6
FF:10014-101C5 62,83,84 years, mixed 261.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.