Fields »
ABOUT
HELP
BLOG
RBM38

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:13.6TPM
GTEx:46.3RPKM
FANTOM5:61.3Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:High
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody CAB017036

  

Endothelial cells

 Medium  

Glandular cells

 High  

Peripheral nerve/ganglion

 Medium  
 
 
 

COLON - HPA RNA-seq

Average TPM

13.6
overview Male, age 54 Sample 1
TPM: 26.3
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 21.7
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 25.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 15.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 10.9
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 17.5
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 1.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 5.4
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 9.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 7.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 11.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 16.1
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 7.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

46.3

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 66.8
Samples: 149

Max RPKM: 155.2
Min RPKM: 23.9
Std RPKM: 24.8
Median RPKM: 63.8
GTEX-Z93S-2626-SM-57WBX 50-59 years, male 155.2
GTEX-145MH-2726-SM-5QGQ6 50-59 years, male 144.2
GTEX-131YS-2926-SM-5EGKI 60-69 years, female 133.9
GTEX-13CF2-1826-SM-5N9GK 60-69 years, male 120.5
GTEX-12ZZX-2726-SM-5N9FT 40-49 years, female 117.9
GTEX-11DXY-2026-SM-5N9CZ 60-69 years, male 117.5
GTEX-ZPU1-1726-SM-4WWFV 40-49 years, male 108.0
GTEX-117XS-2226-SM-5GIE1 60-69 years, male 107.6
GTEX-ZVT3-2826-SM-5GU6A 60-69 years, female 106.0
GTEX-139TS-2226-SM-5J2N1 60-69 years, male 105.1
Show all
Colon - Transverse
RPKM: 30.8
Samples: 196

Max RPKM: 101.6
Min RPKM: 4.0
Std RPKM: 18.4
Median RPKM: 26.5
GTEX-XAJ8-0426-SM-47JYJ 40-49 years, male 101.6
GTEX-14AS3-1126-SM-5Q5CR 40-49 years, female 91.8
GTEX-ZYFC-2626-SM-5NQ6S 50-59 years, male 90.6
GTEX-WQUQ-2526-SM-4MVNO 60-69 years, male 84.9
GTEX-11GSP-1626-SM-5986N 60-69 years, female 82.8
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 80.1
GTEX-13U4I-2426-SM-5LU34 40-49 years, female 70.3
GTEX-13OW5-2626-SM-5MR3M 60-69 years, male 69.4
GTEX-13FH7-1526-SM-5J2N6 50-59 years, female 67.0
GTEX-RU1J-1326-SM-46MUL 20-29 years, female 65.4
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

61.3

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 61.3
FF:10014-101C5 62,83,84 years, mixed 61.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.