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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:21.6TPM
GTEx:8.0RPKM
FANTOM5:38.8Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Not detected
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA026592

  

Endothelial cells

 Not detected  

Glandular cells

 Not detected  

Peripheral nerve/ganglion

 Not detected  
 
 
 

COLON - HPA RNA-seq

Average TPM

21.6
overview Male, age 54 Sample 1
TPM: 11.5
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 17
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 12.7
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 14.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 25.7
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 26.4
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 37.5
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 20.8
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 23.1
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 20.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 23.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 27.5
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 20.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

8.0

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 6.2
Samples: 149

Max RPKM: 23.0
Min RPKM: 0.9
Std RPKM: 4.3
Median RPKM: 5.0
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 23.0
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 20.3
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 19.6
GTEX-ZV6S-1126-SM-57WE9 40-49 years, female 17.6
GTEX-Y114-1626-SM-4TT7I 50-59 years, female 16.9
GTEX-1211K-1826-SM-5EGJ2 60-69 years, female 16.5
GTEX-WI4N-2226-SM-4OOS9 40-49 years, female 14.9
GTEX-111CU-1226-SM-5EGIN 50-59 years, male 14.4
GTEX-13CF3-1326-SM-5LZXZ 60-69 years, female 14.4
GTEX-11DXX-1926-SM-5EGJK 60-69 years, female 13.8
Show all
Colon - Transverse
RPKM: 9.3
Samples: 196

Max RPKM: 309.9
Min RPKM: 1.4
Std RPKM: 21.9
Median RPKM: 6.6
GTEX-14C38-2626-SM-5RQI4 50-59 years, male 309.9
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 26.1
GTEX-ZV6S-1226-SM-59HLH 40-49 years, female 25.1
GTEX-11EQ9-1426-SM-5987G 30-39 years, male 21.0
GTEX-144GN-1126-SM-5LU33 50-59 years, male 20.7
GTEX-QLQ7-1126-SM-4R1KN 60-69 years, male 20.5
GTEX-12WSJ-1526-SM-5GCNI 40-49 years, female 19.8
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 19.6
GTEX-13W3W-2126-SM-5K7UX 60-69 years, female 19.0
GTEX-11EM3-1526-SM-5A5KN 20-29 years, female 18.4
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

38.8

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 38.8
FF:10014-101C5 62,83,84 years, mixed 38.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.