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COLON - Expression summary

RNA expression
HPA:50.7TPM
GTEx:17.9RPKM
FANTOM5:60.0Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

50.7
overview Male, age 54 Sample 1
TPM: 45.4
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 43.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 19.7
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 42.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 51.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 40
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 44.9
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 40
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 107.6
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 26.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 71.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 79.1
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 46.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

17.9

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 20.9
Samples: 149

Max RPKM: 67.6
Min RPKM: 6.4
Std RPKM: 11.0
Median RPKM: 19.0
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 67.6
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 64.7
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 60.7
GTEX-131XE-1026-SM-5EGKE 50-59 years, male 60.3
GTEX-147GR-2826-SM-5RQK8 60-69 years, male 50.9
GTEX-ZYY3-2226-SM-5E45A 60-69 years, female 44.8
GTEX-ZC5H-2426-SM-4WAZ6 40-49 years, female 43.0
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 40.3
GTEX-ZTTD-2626-SM-57WEX 50-59 years, male 38.9
GTEX-13OW5-2826-SM-5KM1G 60-69 years, male 38.5
Show all
Colon - Transverse
RPKM: 15.7
Samples: 196

Max RPKM: 67.0
Min RPKM: 3.2
Std RPKM: 9.8
Median RPKM: 13.3
GTEX-XXEK-1926-SM-4BRVD 50-59 years, male 67.0
GTEX-Q2AH-1226-SM-48TZL 40-49 years, male 51.6
GTEX-SNOS-1226-SM-4DM5H 40-49 years, male 48.4
GTEX-14E6E-1526-SM-5RQIG 30-39 years, male 47.0
GTEX-13S86-1626-SM-5Q5C5 40-49 years, male 40.9
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 40.7
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 38.5
GTEX-13OW5-2626-SM-5MR3M 60-69 years, male 38.4
GTEX-P78B-1726-SM-3P5ZV 40-49 years, female 36.2
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 36.1
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

60.0

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 60.0
FF:10014-101C5 62,83,84 years, mixed 60.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.