Fields »
ABOUT
HELP
BLOG
PRPF38B

GENERAL INFORMATION

Gene name

 PRPF38B

Gene description

 Pre-mRNA processing factor 38B

Protein class

 Predicted intracellular proteins

Predicted localization

 Intracellular

Number of transcripts

 3
SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category
HPA:Expressed in all
GTEx:Expressed in all
FANTOM5:Expressed in all

Protein evidence

 Evidence at protein level

Protein expression

 Cytoplasmic expression in subset of immune cells.

DATA RELIABILITY

Data reliability
description

 Antibody staining mainly consistent with RNA expression data. Pending external verification. Antibody staining in cells/structures not annotated, view images.

Reliability score

 Approved based on 1 antibody.
HPA053255
SHOW MORE

RNA AND PROTEIN EXPRESSION SUMMARY
RNA expression (TPM) Protein expression (score)
Brain
Caudate
N/A
Endocrine tissues
Bone marrow & immune system
Muscle tissues
Lung
Bronchus
N/A
Liver & gallbladder
Pancreas
Gastrointestinal tract
Kidney & urinary bladder
Male tissues
Female tissues
Vagina
N/A
Adipose & soft tissue
Skin
Cerebral cortex

Lymph node

Tonsil

Liver

Colon

Kidney

Testis

PROTEIN EXPRESSION OVERVIEW
Organ
Expression
Alphabetical

RNA EXPRESSION OVERVIEW
HPA dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
GTEx dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
FANTOM5 dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all

GENE INFORMATION

Gene name

 PRPF38B (HGNC Symbol)

Synonyms

 FLJ10330, NET1

Description

 Pre-mRNA processing factor 38B (HGNC Symbol)

Entrez gene summary

Chromosome

 1

Cytoband

 p13.3

Chromosome location (bp)

 108692323 - 108701803

Protein evidence

 Evidence at protein level (all genes)

Ensembl

 ENSG00000134186 (version 83.38)

Entrez gene

 55119

UniProt

 Q5VTL8 (UniProt - Evidence at protein level)

neXtProt

 NX_Q5VTL8

Antibodypedia

 PRPF38B antibodies

PROTEIN BROWSER
PRPF38B-001
PRPF38B-002
PRPF38B-004

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)
PRPF38B-001
ENSP00000359042
ENST00000370025
Q5VTL8 [Direct mapping]
Pre-mRNA-splicing factor 38B
Show all
   SPOCTOPUS predicted membrane proteins
Predicted intracellular proteins
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0006397 [mRNA processing]
GO:0008380 [RNA splicing]
GO:0044822 [poly(A) RNA binding]
GO:0071011 [precatalytic spliceosome]
Show all
 546 aa
64.5 kDa 		No 0
PRPF38B-002
ENSP00000359038
ENST00000370021
A0A0A0MRN0 [Direct mapping]
PRP38 pre-mRNA processing factor 38 (Yeast) domain containing B, isoform CRA_b; Pre-mRNA-splicing factor 38B
Show all
   TMHMM predicted membrane proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0071011 [precatalytic spliceosome]
Show all
 435 aa
52.5 kDa 		No 0
PRPF38B-004
ENSP00000359039
ENST00000370022
Q5VTL8 [Direct mapping]
Pre-mRNA-splicing factor 38B
Show all
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0006397 [mRNA processing]
GO:0008380 [RNA splicing]
GO:0044822 [poly(A) RNA binding]
GO:0071011 [precatalytic spliceosome]
Show all
 190 aa
21.1 kDa 		No 0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.