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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:104.5TPM
GTEx:52.3RPKM
FANTOM5:168.2Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:High
Glandular cells:High
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA038602

  

Antibody HPA057592

  

Antibody CAB006329

  

Endothelial cells

 High   Medium   High  

Glandular cells

 High   Medium   Medium  

Peripheral nerve/ganglion

 Medium   Medium  
     
     
     

COLON - HPA RNA-seq

Average TPM

104.5
overview Male, age 54 Sample 1
TPM: 89.4
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 89.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 64.4
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 103.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 126.6
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 173.9
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 119.9
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 82.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 106.5
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 103.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 93.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 113.3
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 92.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

52.3

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 62.2
Samples: 149

Max RPKM: 92.1
Min RPKM: 30.1
Std RPKM: 10.9
Median RPKM: 62.9
GTEX-XV7Q-2226-SM-4BRVY 40-49 years, female 92.1
GTEX-1399U-2226-SM-5KLZI 50-59 years, female 90.7
GTEX-11ZU8-1126-SM-5EQ5K 60-69 years, male 83.7
GTEX-1477Z-2126-SM-5Q5CM 60-69 years, male 82.0
GTEX-ZPU1-1726-SM-4WWFV 40-49 years, male 80.3
GTEX-12WSD-2626-SM-5EGJE 60-69 years, female 80.1
GTEX-ZP4G-1526-SM-57WE5 20-29 years, female 79.9
GTEX-ZLV1-1326-SM-4WWER 60-69 years, female 79.6
GTEX-11EI6-2626-SM-5PNVT 60-69 years, male 79.3
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 78.6
Show all
Colon - Transverse
RPKM: 44.7
Samples: 196

Max RPKM: 81.1
Min RPKM: 18.8
Std RPKM: 12.9
Median RPKM: 41.7
GTEX-148VJ-2626-SM-5QGPI 70-79 years, male 81.1
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 79.2
GTEX-13U4I-2426-SM-5LU34 40-49 years, female 75.8
GTEX-145LS-2726-SM-5Q5D8 60-69 years, female 75.4
GTEX-11ONC-2026-SM-5HL61 60-69 years, male 74.2
GTEX-Y8LW-1226-SM-4WWDP 50-59 years, female 73.6
GTEX-147JS-2526-SM-5S2Q8 60-69 years, male 71.4
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 70.6
GTEX-S341-1426-SM-4AD6U 40-49 years, female 69.7
GTEX-117YX-0826-SM-5H11J 50-59 years, male 69.5
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

168.2

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 168.2
FF:10014-101C5 62,83,84 years, mixed 168.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.