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SOFT TISSUE - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:43.1TPM
GTEx:27.1RPKM
FANTOM5:54.9Tags Per Million

SOFT TISSUE 1 - Annotated protein expression

Annotated protein
expression

Adipocytes:Medium
Fibroblasts:Medium
Peripheral nerve:Medium
Chondrocytes:Low
 
 
 

Antibody staining

Antibody HPA003894

  

Antibody HPA005437

  

Antibody CAB001945

  

Adipocytes

 Medium   Medium   Medium  

Fibroblasts

 Medium   Medium   Not detected  

Peripheral nerve

 Medium   Medium  

Chondrocytes

 Medium  
        
        
     
     
     

SOFT TISSUE 2 - Annotated protein expression

Annotated protein
expression

Adipocytes:Low
Fibroblasts:Medium
Peripheral nerve:Medium
 
 

Antibody staining

Antibody HPA003894

  

Antibody HPA005437

  

Antibody CAB001945

  

Adipocytes

 Medium   Low   Low  

Fibroblasts

 Medium   High   Not detected  

Peripheral nerve

 Medium   Medium   Medium  
        
     
     
     

ADIPOSE TISSUE - HPA RNA-seq

Average TPM

43.1
N/A Female, age 80 Sample 1
TPM: 65.5
Cell types%
Adipocytes: 95
Other cell types: 5
N/A Female, age 45 Sample 2
TPM: 36.7
N/A Female, age 57 Sample 3
TPM: 37.5
Cell types%
Adipocytes: 60
Fibroblasts: 20
Smooth muscle cells: 15
Other cell types: 5
overview Female, age 74 Sample 4
TPM: 37.7
Cell types%
Adipocytes: 50
Fibroblasts: 30
Smooth muscle cells: 15
Other cell types: 5
overview Female, age 59 Sample 5
TPM: 38.3
Cell types%
Adipocytes: 40
Fibroblasts: 40
Smooth muscle cells: 15
Other cell types: 5

ADIPOSE TISSUE - GTEx RNA-seq

Average RPKM

27.1

GTEx sample id

Sample description

RPKM
Adipose - Subcutaneous
RPKM: 27.6
Samples: 350

Max RPKM: 53.7
Min RPKM: 9.5
Std RPKM: 8.0
Median RPKM: 26.5
GTEX-11DXX-2326-SM-5Q5A2 60-69 years, female 53.7
GTEX-X4EO-0426-SM-4QASA 60-69 years, female 51.0
GTEX-XUZC-1826-SM-4BRVO 30-39 years, female 51.0
GTEX-XUJ4-2526-SM-4BOO4 60-69 years, female 49.1
GTEX-XYKS-2726-SM-4E3IC 60-69 years, female 48.9
GTEX-13O1R-0226-SM-5K7U5 60-69 years, male 47.7
GTEX-WY7C-2426-SM-3NB2V 50-59 years, male 47.3
GTEX-13G51-2626-SM-5LZYW 60-69 years, male 46.9
GTEX-X15G-2326-SM-4PQZS 50-59 years, female 46.0
GTEX-PWN1-0226-SM-5SI7O 40-49 years, female 45.3
Show all
Adipose - Visceral (Omentum)
RPKM: 26.4
Samples: 227

Max RPKM: 64.4
Min RPKM: 9.6
Std RPKM: 8.8
Median RPKM: 25.2
GTEX-1399S-1426-SM-5PNYQ 30-39 years, female 64.4
GTEX-1339X-0726-SM-5L3FF 40-49 years, male 59.1
GTEX-131XG-0126-SM-5K7UJ 50-59 years, female 50.9
GTEX-11I78-0226-SM-5HL6R 50-59 years, female 50.7
GTEX-11WQK-1526-SM-5EGKN 50-59 years, male 48.5
GTEX-13X6H-1726-SM-5Q5EH 50-59 years, female 46.8
GTEX-13G51-0526-SM-5IJCQ 60-69 years, male 46.3
GTEX-133LE-0926-SM-5P9J1 20-29 years, female 44.4
GTEX-11EQ9-1126-SM-5987I 30-39 years, male 44.0
GTEX-ZPCL-1026-SM-5GCOX 60-69 years, female 44.0
Show all

ADIPOSE TISSUE - FANTOM5 CAGE

Average Tags Per Million

54.9

FANTOM5 sample id

Sample description

Tags Per Million
Adipose tissue
Tags Per Million: 54.9
FF:10010-101C1 65,65,76 years, mixed 54.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.