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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:356.6TPM
GTEx:112.1RPKM
FANTOM5:388.4Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Medium
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA047478

  

Antibody HPA055752

  

Antibody CAB008678

  

Endothelial cells

 Not detected   Low   Not detected  

Glandular cells

 Medium   Medium   High  

Peripheral nerve/ganglion

 Not detected   Not detected   Not detected  
     
     

COLON - HPA RNA-seq

Average TPM

356.6
overview Male, age 54 Sample 1
TPM: 331.9
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 430.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 363
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 462.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 215.3
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 382.3
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 459.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 440.6
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 253
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 444.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 331.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 310.6
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 211.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

112.1

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 63.7
Samples: 149

Max RPKM: 150.7
Min RPKM: 35.5
Std RPKM: 19.1
Median RPKM: 59.0
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 150.7
GTEX-ZLV1-1326-SM-4WWER 60-69 years, female 124.5
GTEX-ZTTD-2626-SM-57WEX 50-59 years, male 110.2
GTEX-Y5LM-1426-SM-5RQJL 40-49 years, female 109.8
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 109.2
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 107.7
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 106.5
GTEX-1399U-2226-SM-5KLZI 50-59 years, female 105.9
GTEX-13O61-1526-SM-5KM3P 60-69 years, male 105.6
GTEX-XBED-1726-SM-47JYO 60-69 years, male 104.4
Show all
Colon - Transverse
RPKM: 148.9
Samples: 196

Max RPKM: 367.4
Min RPKM: 34.8
Std RPKM: 72.0
Median RPKM: 151.4
GTEX-T5JW-1126-SM-4DM5V 20-29 years, female 367.4
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 342.2
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 336.2
GTEX-11I78-1226-SM-5A5K6 50-59 years, female 301.5
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 297.1
GTEX-139TS-1926-SM-5IJFO 60-69 years, male 295.0
GTEX-11EM3-1526-SM-5A5KN 20-29 years, female 291.6
GTEX-Y3IK-1826-SM-4WWDS 50-59 years, female 281.8
GTEX-U4B1-1126-SM-4DXV3 40-49 years, male 276.1
GTEX-YF7O-1726-SM-5IFJ9 50-59 years, male 275.6
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

388.4

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 388.4
FF:10014-101C5 62,83,84 years, mixed 388.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.