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XPA

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:10.7TPM
GTEx:11.3RPKM
FANTOM5:52.4Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:High
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody CAB000155

  

Endothelial cells

 Medium  

Glandular cells

 High  

Peripheral nerve/ganglion

 Medium  
 
 
 

COLON - HPA RNA-seq

Average TPM

10.7
overview Male, age 54 Sample 1
TPM: 10.9
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 10.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 7.4
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 11.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 8.1
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 13.5
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 11.9
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 9.5
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 12.6
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 11.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 10.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 13.5
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 8.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

11.3

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 14.3
Samples: 149

Max RPKM: 23.8
Min RPKM: 6.2
Std RPKM: 2.4
Median RPKM: 14.3
GTEX-1477Z-2126-SM-5Q5CM 60-69 years, male 23.8
GTEX-ZT9W-1726-SM-51MS3 50-59 years, male 22.0
GTEX-ZTSS-1226-SM-51MSZ 40-49 years, male 22.0
GTEX-ZPCL-1626-SM-57WGC 60-69 years, female 20.1
GTEX-145ME-1126-SM-5SIAT 40-49 years, female 19.8
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 18.6
GTEX-12ZZY-2726-SM-5EQ45 60-69 years, male 18.1
GTEX-13OW5-2826-SM-5KM1G 60-69 years, male 18.1
GTEX-ZG7Y-1826-SM-4WWD3 50-59 years, male 17.9
GTEX-145MO-2626-SM-5QGPD 60-69 years, male 17.6
Show all
Colon - Transverse
RPKM: 9.1
Samples: 196

Max RPKM: 19.0
Min RPKM: 2.9
Std RPKM: 3.3
Median RPKM: 7.9
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 19.0
GTEX-Z93S-2426-SM-5HL8N 50-59 years, male 16.8
GTEX-111YS-1626-SM-5GZZ9 60-69 years, male 16.3
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 16.1
GTEX-13U4I-2426-SM-5LU34 40-49 years, female 16.1
GTEX-148VJ-2626-SM-5QGPI 70-79 years, male 16.1
GTEX-XXEK-1926-SM-4BRVD 50-59 years, male 15.9
GTEX-12WSL-1626-SM-5GCMU 50-59 years, male 15.8
GTEX-ZYFC-2626-SM-5NQ6S 50-59 years, male 15.8
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 15.6
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

52.4

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 52.4
FF:10014-101C5 62,83,84 years, mixed 52.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.