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GCM1

GENERAL INFORMATION

Gene name

 GCM1

Gene description

 Glial cells missing homolog 1 (Drosophila)

Protein class

 Predicted intracellular proteins
Transcription factors

Predicted localization

 Intracellular

Number of transcripts

 1
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HUMAN PROTEIN ATLAS INFORMATION

RNA category
TCGA (cancer tissue):Not detected
HPA (cell line):Cell line enriched (BEWO)
HPA (normal tissue):Tissue enriched (placenta)

Protein evidence

 Evidence at protein level

Protein expression
normal tissue

 Nuclear expression in placental trophoblasts.

ANTIBODY IHC RELIABILITY

Data reliability
description

 Antibody staining mainly consistent with RNA expression data. Presumed off target binding observed and disregarded.

Reliability score

 Supported based on 1 antibody.
HPA011343
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PROGNOSTIC SUMMARY
Gene product is not prognostic.
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RNA EXPRESSION OVERVIEW
TCGA dataset
RNA cancer category: Not detected

PROTEIN EXPRESSION
Colorectal cancer
Breast cancer
Prostate cancer
Lung cancer
Liver cancer

STAINING SUMMARY
HPA011343

GENE INFORMATION

Gene name

 GCM1 (HGNC Symbol)

Synonyms

 GCMA, hGCMa

Description

 Glial cells missing homolog 1 (Drosophila) (HGNC Symbol)

Entrez gene summary

 This gene encodes a DNA-binding protein with a gcm-motif (glial cell missing motif). The encoded protein is a homolog of the Drosophila glial cells missing gene (gcm). This protein binds to the GCM-motif (A/G)CCCGCAT, a novel sequence among known targets of DNA-binding proteins. The N-terminal DNA-binding domain confers the unique DNA-binding activity of this protein. [provided by RefSeq, Jul 2008]

Chromosome

 6

Cytoband

 p12.1

Chromosome location (bp)

 53126964 - 53148829

Protein evidence

 Evidence at protein level (all genes)

Ensembl

 ENSG00000137270 (version 83.38)

Entrez gene

 8521

UniProt

 Q9NP62 (UniProt - Evidence at transcript level)

neXtProt

 NX_Q9NP62

Antibodypedia

 GCM1 antibodies

PROTEIN BROWSER
GCM1-001

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)
GCM1-001
ENSP00000259803
ENST00000259803
Q9NP62 [Direct mapping]
Chorion-specific transcription factor GCMa
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Predicted intracellular proteins
Transcription factors
   beta-Hairpin exposed by an alpha/beta-scaffold
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GO:0000978 [RNA polymerase II core promoter proximal region sequence-specific DNA binding]
GO:0000981 [RNA polymerase II transcription factor activity, sequence-specific DNA binding]
GO:0001077 [transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding]
GO:0003677 [DNA binding]
GO:0003700 [transcription factor activity, sequence-specific DNA binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005667 [transcription factor complex]
GO:0006355 [regulation of transcription, DNA-templated]
GO:0006366 [transcription from RNA polymerase II promoter]
GO:0008134 [transcription factor binding]
GO:0008270 [zinc ion binding]
GO:0009653 [anatomical structure morphogenesis]
GO:0042826 [histone deacetylase binding]
GO:0045944 [positive regulation of transcription from RNA polymerase II promoter]
GO:0060018 [astrocyte fate commitment]
GO:0060143 [positive regulation of syncytium formation by plasma membrane fusion]
GO:0060670 [branching involved in labyrinthine layer morphogenesis]
GO:0060706 [cell differentiation involved in embryonic placenta development]
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 436 aa
49.3 kDa 		No 0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.