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SDCBP

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:116.8TPM
GTEx:43.8RPKM
FANTOM5:125.8Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:High
 

Antibody staining

Antibody HPA023840

  

Antibody CAB012245

  

Endothelial cells

 Medium   Medium  

Glandular cells

 Medium   Medium  

Peripheral nerve/ganglion

 High   High  
   
   
   

COLON - HPA RNA-seq

Average TPM

116.8
overview Male, age 54 Sample 1
TPM: 120.8
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 74.2
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 70.8
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 103.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 102.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 148
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 143.3
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 99
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 144.8
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 116.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 140.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 131.6
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 122.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

43.8

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 44.1
Samples: 149

Max RPKM: 96.7
Min RPKM: 22.5
Std RPKM: 11.0
Median RPKM: 42.2
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 96.7
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 78.4
GTEX-WFON-1326-SM-4LVMN 40-49 years, male 70.8
GTEX-Y114-1626-SM-4TT7I 50-59 years, female 66.2
GTEX-14C39-1626-SM-5S2P4 40-49 years, male 66.0
GTEX-ZAB4-2426-SM-5HL8A 40-49 years, male 65.4
GTEX-14C5O-2626-SM-5RQI5 60-69 years, male 64.0
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 63.6
GTEX-WI4N-2226-SM-4OOS9 40-49 years, female 63.4
GTEX-XUZC-1526-SM-4BRV4 30-39 years, female 62.1
Show all
Colon - Transverse
RPKM: 43.5
Samples: 196

Max RPKM: 151.5
Min RPKM: 23.2
Std RPKM: 16.3
Median RPKM: 39.1
GTEX-14C38-2626-SM-5RQI4 50-59 years, male 151.5
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 105.7
GTEX-1339X-1626-SM-5IJDN 40-49 years, male 96.4
GTEX-144GM-1226-SM-5LU52 20-29 years, male 86.0
GTEX-13W3W-2126-SM-5K7UX 60-69 years, female 82.2
GTEX-13O3P-2326-SM-5KM55 50-59 years, male 80.4
GTEX-111VG-2226-SM-5N9DU 60-69 years, male 78.7
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 78.2
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 76.9
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 76.2
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

125.8

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 125.8
FF:10014-101C5 62,83,84 years, mixed 125.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.