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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:4.4TPM
GTEx:1.9RPKM
FANTOM5:13.7Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:High
 

Antibody staining

Antibody HPA034557

  

Endothelial cells

 Medium  

Glandular cells

 Medium  

Peripheral nerve/ganglion

 High  
 
 
 

COLON - HPA RNA-seq

Average TPM

4.4
overview Male, age 54 Sample 1
TPM: 5.1
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 4.3
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 4.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 3.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 3.4
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 4.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 4.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 3.7
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 5.1
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 4.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 5.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 4.4
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 3.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

1.9

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 2.2
Samples: 149

Max RPKM: 4.6
Min RPKM: 0.6
Std RPKM: 0.7
Median RPKM: 2.2
GTEX-Y9LG-1326-SM-4VBQB 30-39 years, male 4.6
GTEX-13QBU-2026-SM-5KLZB 40-49 years, female 4.2
GTEX-13U4I-2626-SM-5SI9C 40-49 years, female 3.8
GTEX-145LS-2926-SM-5O99G 60-69 years, female 3.7
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 3.5
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 3.4
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 3.4
GTEX-13CF2-1826-SM-5N9GK 60-69 years, male 3.3
GTEX-WYVS-1126-SM-4SOJX 40-49 years, female 3.3
GTEX-ZC5H-2426-SM-4WAZ6 40-49 years, female 3.3
Show all
Colon - Transverse
RPKM: 1.7
Samples: 196

Max RPKM: 3.7
Min RPKM: 0.1
Std RPKM: 0.6
Median RPKM: 1.7
GTEX-13U4I-2426-SM-5LU34 40-49 years, female 3.7
GTEX-ZYFC-2626-SM-5NQ6S 50-59 years, male 3.7
GTEX-YEC4-1926-SM-5IFHJ 40-49 years, male 3.5
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 3.3
GTEX-11TUW-2026-SM-5EQL8 60-69 years, male 3.2
GTEX-OXRL-1426-SM-3NM9E 50-59 years, male 3.1
GTEX-12KS4-2426-SM-5LU8P 30-39 years, male 3.0
GTEX-13FHP-2426-SM-5KLZ5 50-59 years, male 3.0
GTEX-148VJ-2626-SM-5QGPI 70-79 years, male 2.9
GTEX-S341-1426-SM-4AD6U 40-49 years, female 2.9
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

13.7

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 13.7
FF:10014-101C5 62,83,84 years, mixed 13.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.