Fields »
ABOUT
HELP
BLOG
SSB

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:52.2TPM
GTEx:13.7RPKM
FANTOM5:93.2Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:High
Peripheral nerve/ganglion:Medium
 
 
 

Antibody staining

Antibody HPA017287

  

Antibody CAB004643

  

Endothelial cells

 Medium  

Glandular cells

 High   High  

Peripheral nerve/ganglion

 High  
      
      
   
   
   

COLON - HPA RNA-seq

Average TPM

52.2
overview Male, age 54 Sample 1
TPM: 53.1
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 50
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 43.3
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 58.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 56.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 62.2
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 53.1
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 45
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 50.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 62.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 48.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 59.8
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 36.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

13.7

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 14.9
Samples: 149

Max RPKM: 24.6
Min RPKM: 7.4
Std RPKM: 2.5
Median RPKM: 14.6
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 24.6
GTEX-ZTSS-1226-SM-51MSZ 40-49 years, male 22.9
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 22.7
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 22.5
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 21.5
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 19.6
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 19.3
GTEX-12WSL-1826-SM-5LZW9 50-59 years, male 18.7
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 18.7
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 18.5
Show all
Colon - Transverse
RPKM: 12.8
Samples: 196

Max RPKM: 24.2
Min RPKM: 4.3
Std RPKM: 3.2
Median RPKM: 12.6
GTEX-1339X-1626-SM-5IJDN 40-49 years, male 24.2
GTEX-13W3W-2126-SM-5K7UX 60-69 years, female 23.6
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 22.4
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 21.8
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 20.8
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 19.6
GTEX-XXEK-1926-SM-4BRVD 50-59 years, male 19.1
GTEX-R53T-1326-SM-48FCQ 50-59 years, female 18.5
GTEX-XV7Q-2126-SM-4BRVX 40-49 years, female 18.3
GTEX-O5YT-1426-SM-3MJHC 20-29 years, male 18.0
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

93.2

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 93.2
FF:10014-101C5 62,83,84 years, mixed 93.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.