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CILP

COLON - Expression summary

Protein expression
N/A

RNA expression
HPA:8.2TPM
GTEx:17.8RPKM
FANTOM5:23.9Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

8.2
overview Male, age 54 Sample 1
TPM: 9.4
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 2.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 1.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 9.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 4.7
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 15.3
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 6
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 3.8
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 11.8
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 1.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 9.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 11.7
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 16.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

17.8

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 21.1
Samples: 149

Max RPKM: 149.7
Min RPKM: 2.4
Std RPKM: 22.1
Median RPKM: 14.9
GTEX-WFON-1326-SM-4LVMN 40-49 years, male 149.7
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 124.7
GTEX-XUZC-1526-SM-4BRV4 30-39 years, female 97.9
GTEX-ZQG8-2426-SM-57WEE 60-69 years, female 90.9
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 88.1
GTEX-11DXX-1926-SM-5EGJK 60-69 years, female 78.2
GTEX-13OVJ-1826-SM-5KM2D 50-59 years, female 73.2
GTEX-11EQ9-1526-SM-5PNY7 30-39 years, male 62.4
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 61.6
GTEX-14C39-1626-SM-5S2P4 40-49 years, male 53.4
Show all
Colon - Transverse
RPKM: 15.3
Samples: 196

Max RPKM: 195.2
Min RPKM: 0.8
Std RPKM: 18.3
Median RPKM: 10.2
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 195.2
GTEX-11VI4-1526-SM-5EQKC 40-49 years, female 82.9
GTEX-12ZZZ-2426-SM-5GCNN 60-69 years, male 69.1
GTEX-ZYFG-1926-SM-5GID5 60-69 years, female 61.4
GTEX-13W3W-2126-SM-5K7UX 60-69 years, female 59.5
GTEX-12WSJ-1526-SM-5GCNI 40-49 years, female 54.2
GTEX-117YX-0826-SM-5H11J 50-59 years, male 52.7
GTEX-145LS-2726-SM-5Q5D8 60-69 years, female 43.2
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 41.3
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 40.2
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

23.9

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 23.9
FF:10014-101C5 62,83,84 years, mixed 23.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.