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SGSM2

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:13.3TPM
GTEx:24.8RPKM
FANTOM5:24.9Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:High
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA021641

  

Antibody HPA024553

  

Endothelial cells

 Medium   Low  

Glandular cells

 High   Medium  

Peripheral nerve/ganglion

 Medium   Medium  
   
   
   

COLON - HPA RNA-seq

Average TPM

13.3
overview Male, age 54 Sample 1
TPM: 12.5
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 12.7
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 10.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 8.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 10.7
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 16
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 9.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 14
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 17.9
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 9.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 12.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 14.6
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 22.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

24.8

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 29.5
Samples: 149

Max RPKM: 58.2
Min RPKM: 13.6
Std RPKM: 8.4
Median RPKM: 28.4
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 58.2
GTEX-13PVQ-2726-SM-5L3H7 50-59 years, male 52.7
GTEX-Z93S-2626-SM-57WBX 50-59 years, male 47.4
GTEX-ZVT3-2826-SM-5GU6A 60-69 years, female 47.4
GTEX-X4EO-2726-SM-4E3HS 60-69 years, female 45.8
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 45.4
GTEX-YECK-2826-SM-5IFHF 60-69 years, male 45.4
GTEX-11DXY-2026-SM-5N9CZ 60-69 years, male 44.4
GTEX-13OW5-2826-SM-5KM1G 60-69 years, male 44.2
GTEX-12KS4-2326-SM-5EGJB 30-39 years, male 42.9
Show all
Colon - Transverse
RPKM: 21.1
Samples: 196

Max RPKM: 49.5
Min RPKM: 8.4
Std RPKM: 7.3
Median RPKM: 19.6
GTEX-11TUW-2026-SM-5EQL8 60-69 years, male 49.5
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 45.3
GTEX-147JS-2526-SM-5S2Q8 60-69 years, male 41.9
GTEX-ZAB4-2226-SM-5HL97 40-49 years, male 41.2
GTEX-Z93S-2426-SM-5HL8N 50-59 years, male 40.2
GTEX-13OW5-2626-SM-5MR3M 60-69 years, male 39.2
GTEX-11O72-2226-SM-5PNW2 40-49 years, male 38.7
GTEX-11GSP-1626-SM-5986N 60-69 years, female 36.5
GTEX-13U4I-2426-SM-5LU34 40-49 years, female 36.5
GTEX-ZYFC-2626-SM-5NQ6S 50-59 years, male 35.8
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

24.9

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 24.9
FF:10014-101C5 62,83,84 years, mixed 24.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.