Tissue expression of SS18 - Staining in breast

BREAST - Expression summary

Protein expression

RNA expression

HPA:	40.6	TPM
GTEx:	16.5	RPKM
FANTOM5:	66.9	Tags Per Million

BREAST - Annotated protein expression

Annotated protein
expression

Adipocytes:	Low
Glandular cells:	Medium
Myoepithelial cells:	Medium

Antibody staining	Antibody HPA055741	Antibody HPA059539
Adipocytes	Low	Low
Glandular cells	Medium	Medium
Myoepithelial cells	Medium	Medium

BREAST - HPA RNA-seq

Average TPM	40.6

Female, age 52

Sample 1
TPM: 32.7

Cell types%

Glandular cells: 15
Adipocytes: 5
Other cell types: 80

Female, age 80

Sample 2
TPM: 38.8

Cell types%

Glandular cells: 5
Adipocytes: 15
Other cell types: 80

Female, age 47

Sample 3
TPM: 55.8

Cell types%

Glandular cells: 5
Adipocytes: 5
Other cell types: 90

Female, age 38

Sample 4
TPM: 34.9

Cell types%

Glandular cells: 40
Adipocytes: 5
Other cell types: 55

BREAST - GTEx RNA-seq

Average RPKM	16.5

GTEx sample id

Sample description

RPKM

Breast - Mammary Tissue
RPKM: 16.5

Samples: 214

Max RPKM: 26.7
Min RPKM: 8.8
Std RPKM: 3.3
Median RPKM: 16.0

GTEX-QEG5-0726-SM-4R1JQ

20-29 years, male

26.7

GTEX-WYVS-1726-SM-3NMAY

40-49 years, female

25.4

GTEX-VJWN-0726-SM-3GIJ8

50-59 years, female

25.2

GTEX-Q2AG-0326-SM-48U1O

40-49 years, female

23.6

GTEX-13FTY-2226-SM-5J1ND

40-49 years, female

23.4

GTEX-TML8-1226-SM-32QON

40-49 years, female

23.3

GTEX-U3ZH-1426-SM-4DXSR

30-39 years, male

23.2

GTEX-ZF2S-2026-SM-5E461

50-59 years, female

23.0

GTEX-R55F-1726-SM-2TF4R

50-59 years, male

22.8

GTEX-WYBS-0926-SM-3NM94

60-69 years, female

22.8

Show all

BREAST - FANTOM5 CAGE

Average Tags Per Million	66.9

FANTOM5 sample id

Sample description

Tags Per Million

Breast
Tags Per Million: 66.9

FF:10080-102A8

77 years, female

66.9