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SS18

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:20.8TPM
GTEx:12.8RPKM
FANTOM5:76.3Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:High
Peripheral nerve/ganglion:Not detected
 
 

Antibody staining

Antibody HPA055741

  

Antibody HPA059539

  

Endothelial cells

 Not detected   Medium  

Glandular cells

 High   High  

Peripheral nerve/ganglion

 Not detected  
      
   
   
   

COLON - HPA RNA-seq

Average TPM

20.8
overview Male, age 54 Sample 1
TPM: 22.8
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 18.2
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 14.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 19.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 14.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 21.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 23.5
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 21
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 23.8
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 21.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 24.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 24.5
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 19.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

12.8

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 13.3
Samples: 149

Max RPKM: 18.7
Min RPKM: 8.0
Std RPKM: 1.8
Median RPKM: 13.1
GTEX-ZTTD-2626-SM-57WEX 50-59 years, male 18.7
GTEX-145ME-1126-SM-5SIAT 40-49 years, female 18.1
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 17.5
GTEX-Y9LG-1326-SM-4VBQB 30-39 years, male 17.4
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 17.1
GTEX-11EM3-1626-SM-5N9CO 20-29 years, female 16.6
GTEX-11ZU8-1126-SM-5EQ5K 60-69 years, male 16.6
GTEX-13FH7-1626-SM-5J2O9 50-59 years, female 16.6
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 16.5
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 16.1
Show all
Colon - Transverse
RPKM: 12.4
Samples: 196

Max RPKM: 18.7
Min RPKM: 5.4
Std RPKM: 2.1
Median RPKM: 12.0
GTEX-13CF3-1426-SM-5K7YY 60-69 years, female 18.7
GTEX-Y114-1526-SM-4TT79 50-59 years, female 17.7
GTEX-148VJ-2626-SM-5QGPI 70-79 years, male 17.5
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 17.4
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 16.9
GTEX-S341-1426-SM-4AD6U 40-49 years, female 16.6
GTEX-111YS-1626-SM-5GZZ9 60-69 years, male 16.3
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 16.3
GTEX-XXEK-1926-SM-4BRVD 50-59 years, male 16.2
GTEX-13FHP-2426-SM-5KLZ5 50-59 years, male 16.1
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

76.3

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 76.3
FF:10014-101C5 62,83,84 years, mixed 76.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.