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COLON - Expression summary

RNA expression
HPA:27.5TPM
GTEx:14.1RPKM
FANTOM5:74.7Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

27.5
overview Male, age 54 Sample 1
TPM: 24.1
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 27.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 18.1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 21.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 37.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 28.4
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 27.1
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 27.5
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 33.2
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 19.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 31.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 26.4
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 35.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

14.1

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 12.7
Samples: 149

Max RPKM: 27.0
Min RPKM: 5.8
Std RPKM: 3.4
Median RPKM: 12.4
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 27.0
GTEX-ZAB4-2426-SM-5HL8A 40-49 years, male 24.6
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 24.3
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 21.1
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 20.1
GTEX-WI4N-2226-SM-4OOS9 40-49 years, female 19.8
GTEX-147GR-2826-SM-5RQK8 60-69 years, male 19.2
GTEX-ZV6S-1126-SM-57WE9 40-49 years, female 19.1
GTEX-11DXX-1926-SM-5EGJK 60-69 years, female 17.9
GTEX-1477Z-2126-SM-5Q5CM 60-69 years, male 17.9
Show all
Colon - Transverse
RPKM: 15.2
Samples: 196

Max RPKM: 105.0
Min RPKM: 7.2
Std RPKM: 7.5
Median RPKM: 14.2
GTEX-14C38-2626-SM-5RQI4 50-59 years, male 105.0
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 31.8
GTEX-13OVJ-1726-SM-5IJDZ 50-59 years, female 29.1
GTEX-UPIC-1726-SM-4IHKG 20-29 years, female 26.9
GTEX-1339X-1626-SM-5IJDN 40-49 years, male 26.1
GTEX-147JS-2526-SM-5S2Q8 60-69 years, male 23.6
GTEX-Q2AH-1226-SM-48TZL 40-49 years, male 23.0
GTEX-147F3-1926-SM-5SIB9 50-59 years, female 21.9
GTEX-13PL7-2526-SM-5IFGR 60-69 years, female 21.8
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 21.7
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

74.7

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 74.7
FF:10014-101C5 62,83,84 years, mixed 74.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.