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Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Cancer

Specificity

Tissue

Detectable

Cell line

Detectable

Cancer

Detectable

Cancer

Prognosis

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Score

Score

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Antibodies

Column

 
 
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NBPF3
  • TISSUE

  • CELL

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TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation


Dictionary


Tissue proteome

GENERAL INFORMATION

Gene name

NBPF3

Gene description

Neuroblastoma breakpoint family, member 3

Protein class

Predicted intracellular proteins

Predicted localization

Intracellular

Number of transcripts

4
SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:Tissue enriched (testis)
GTEx:Mixed
FANTOM5:Tissue enhanced (testis)

Protein evidence

Evidence at protein level

Protein expression

Cytoplasmic expression mainly in a subset of cells in seminiferous ducts.

DATA RELIABILITY

Data reliability
description

Antibody staining mainly not consistent with RNA expression data. Pending external verification. Caution, targets protein from more than one gene.

Reliability score

Approved based on 5 antibodies.
HPA042595 , HPA043692 , HPA044023 , HPA046971 , HPA058050
SHOW MORE

RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM) Protein expression (score)
Brain
Cerebral cortex
Hippocampus
N/A
Caudate
N/A
Cerebellum
N/A
Endocrine tissues
Thyroid gland
Parathyroid gland
Adrenal gland
Bone marrow & immune system
Appendix
Bone marrow
Lymph node
Tonsil
Spleen
Muscle tissues
Heart muscle
Skeletal muscle
Smooth muscle
Lung
Nasopharynx
N/A
Bronchus
N/A
Lung
Liver & gallbladder
Liver
Gallbladder
Pancreas
Pancreas
Gastrointestinal tract
Oral mucosa
N/A
Salivary gland
Esophagus
Stomach
Duodenum
Small intestine
Colon
Rectum
Kidney & urinary bladder
Kidney
Urinary bladder
Male tissues
Testis
Epididymis
Prostate
Seminal vesicle
Female tissues
Breast
Vagina
N/A
Cervix, uterine
Endometrium
Fallopian tube
Ovary
Placenta
Adipose & soft tissue
Adipose tissue
Soft tissue
N/A
Skin
Skin
Cerebral cortex

Lymph node

Liver

Colon

Kidney

Testis

PROTEIN EXPRESSION OVERVIEW

Organ
Expression
Alphabetical

RNA EXPRESSION OVERVIEW

HPA dataset
Organ
Expression
Alphabetical
RNA tissue category: Tissue enriched (testis)
GTEx dataset
Organ
Expression
Alphabetical
RNA tissue category: Mixed
FANTOM5 dataset
Organ
Expression
Alphabetical
RNA tissue category: Tissue enhanced (testis)

GENE INFORMATION

Gene name

NBPF3 (HGNC Symbol)

Synonyms

AE2

Description

Neuroblastoma breakpoint family, member 3 (HGNC Symbol)

Entrez gene summary

This gene is a member of the neuroblastoma breakpoint family (NBPF) which consists of dozens of recently duplicated genes primarily located in segmental duplications on human chromosome 1. This gene family has experienced its greatest expansion within the human lineage and has expanded, to a lesser extent, among primates in general. Members of this gene family are characterized by tandemly repeated copies of DUF1220 protein domains. DUF1220 copy number variations in human chromosomal region 1q21.1, where most DUF1220 domains are located, have been implicated in a number of developmental and neurogenetic diseases such as microcephaly, macrocephaly, autism, schizophrenia, mental retardation, congenital heart disease, neuroblastoma, and congenital kidney and urinary tract anomalies. Altered expression of some gene family members is associated with several types of cancer. This gene family contains numerous pseudogenes. [provided by RefSeq, Feb 2013]

Chromosome

1

Cytoband

p36.12

Chromosome location (bp)

21440128 - 21485005

Protein evidence

Evidence at protein level (all genes)

Ensembl

ENSG00000142794 (version 83.38)

Entrez gene

84224

UniProt

Q9H094 (UniProt - Evidence at transcript level)

neXtProt

NX_Q9H094

Antibodypedia

NBPF3 antibodies

PROTEIN BROWSER

NBPF3-002
NBPF3-011
NBPF3-012
NBPF3-201

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)

NBPF3-002
ENSP00000340336
ENST00000342104
Q9H094 [Direct mapping]
Neuroblastoma breakpoint family member 3
Show all
Predicted intracellular proteins
Show all
GO:0005737 [cytoplasm]
GO:1903955 [positive regulation of protein targeting to mitochondrion]
Show all
621 aa
71.6 kDa
No 0
NBPF3-011
ENSP00000316782
ENST00000318249
Q9H094 [Direct mapping]
Neuroblastoma breakpoint family member 3
Show all
Predicted intracellular proteins
Show all
GO:0005737 [cytoplasm]
GO:1903955 [positive regulation of protein targeting to mitochondrion]
Show all
633 aa
73 kDa
No 0
NBPF3-012
ENSP00000415711
ENST00000454000
Q9H094 [Direct mapping]
Neuroblastoma breakpoint family member 3
Show all
Predicted intracellular proteins
Show all
GO:0005737 [cytoplasm]
GO:1903955 [positive regulation of protein targeting to mitochondrion]
Show all
563 aa
65.1 kDa
No 0
NBPF3-201
ENSP00000484028
ENST00000619554
Q9H094 [Direct mapping]
Neuroblastoma breakpoint family member 3
Show all
Predicted intracellular proteins
Show all
GO:0005737 [cytoplasm]
GO:1903955 [positive regulation of protein targeting to mitochondrion]
Show all
577 aa
67.1 kDa
No 0

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The Human Protein Atlas project is funded
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